Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2636 168 7e-37 seq7809 125 7e-24 seq28812 104 2e-17 seq4071 98.7 1e-15 >seq2636 Length=44840 Score = 168 bits (186), Expect = 7e-37 Identities = 429/646 (66%), Gaps = 39/646 (6%) Strand=Plus/Plus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT-CGTCCCTGGAAATGAGTTC 132938 || ||||||| | ||||||||||| || ||||||| | || | | || ||||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTG-AAGCCCTTCATCACGGCTTATTAGTTC 42587 Query 132939 GTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAA 132998 |||||||| ||||| || ||||| || || || || || | ||| || || | || || Sbjct 42588 ATTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGC-AA 42646 Query 132999 ACTGCCCG-AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG 133057 || |||| ||||||| || ||||| ||||| || || || || || ||||| || | Sbjct 42647 ACGACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAG 42706 Query 133058 TGG-CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGC 133116 ||| |||| | | ||||| || ||||| || ||||| | || || || || Sbjct 42707 TGGACTTCGAGTCAC-CAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGT 42765 Query 133117 ATCGTTTCGATGGCGTTCAACA-------------AACGGAGT--------------TTC 133149 | |||| | || || |||| |||| | | || Sbjct 42766 AGGGTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTA 42825 Query 133150 TCTTCCGA---GGAACGCACG-TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTAC 133205 | | ||| || | | || || ||||||||| ||||||||||||||||| | Sbjct 42826 CCGTTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAAT 42885 Query 133206 GTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTG 133265 || || || || || || ||||| || ||||| || || || | ||| |||||||| Sbjct 42886 ATTTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTG 42945 Query 133266 AGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAG 133325 | ||| || || || |||||||| || || || |||||||| ||||| ||||| || || Sbjct 42946 ACTGAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAG 43005 Query 133326 CACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTT 133385 || | ||||| || |||| ||| || | | |||||||| | |||||| Sbjct 43006 GACATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTT 43065 Query 133386 GGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CC 133444 | || ||| || ||||| ||||||||||| || ||| | || || ||||| | ||| || Sbjct 43066 CGCCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTA-AAACTGCC 43124 Query 133445 ACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 | ||||| ||| || ||||| | ||||| ||||| | ||||| Sbjct 43125 AGATGTCATGATACTGGATGGGCATGATCACGAACCGCCTCGGGTT 43170 >seq7809 Length=21078 Score = 125 bits (138), Expect = 7e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || |||||||| || || | || || ||| ||| | Sbjct 13380 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13439 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | || || | | || | ||||||| ||||||||||||| ||||||| |||| Sbjct 13440 GACTCGATTGAGAATG-TGAAGGCTAAAATCCAGGACAAAGAGGGAA-TCCCGCCGGACC 13497 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| || |||||||| || || || | |||||||| |||||||| Sbjct 13498 AACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACA 13557 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | || |||||||| |||| || ||| | || |||| Sbjct 13558 ATATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCG 13594 Score = 120 bits (132), Expect = 3e-22 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || |||||||| || || | || || ||| ||| | Sbjct 13608 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13667 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | || || | | || | ||||||| ||||||||||||| ||||||| |||| Sbjct 13668 GACTCGATTGAGAATG-TGAAGGCTAAAATCCAGGACAAAGAGGGAA-TCCCGCCGGACC 13725 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| || |||||||| || || || | || ||||| |||||||| Sbjct 13726 AACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACA 13785 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | || |||||||| |||| || ||| | || |||| Sbjct 13786 ATATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCG 13822 Score = 111 bits (122), Expect = 2e-19 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || |||||||| || || | || || || | | | Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | || || | | |||| ||||||| ||||||||||||| ||||||| |||| Sbjct 13212 GACTCGATTGAGAATG-TCAAAGCTAAAATCCAGGACAAAGAGGGAA-TCCCGCCGGACC 13269 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| || |||||||| || || || | |||||||| |||||||| Sbjct 13270 AACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACA 13329 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | || |||||||| |||| || ||| | || |||| Sbjct 13330 ATATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCG 13366 >seq28812 Length=1987 Score = 104 bits (114), Expect = 2e-17 Identities = 175/249 (70%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 133172 TGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGT 133231 ||||||||||| |||||||| |||||||| | || || || || || || ||||| | Sbjct 941 TGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCAATCTGGAAGCCAT 1000 Query 133232 AAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGT 133291 | ||||| || || ||| | ||| ||||||| | ||| || || || |||||||| | Sbjct 1001 AGAAGCAACGGGCTTCG-GAATCTGTACTTCTTTACTGAAGCGTTCCACAAGATTTTCAT 1059 Query 133292 TGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAAT----GGCGC 133347 |||| || ||||| | ||||| ||||| || || || | ||||||| || | Sbjct 1060 TGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT-----ATGAAATTAAGTGCTC 1114 Query 133348 TCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 || ||| || |||| ||| |||| | || || | || ||| || ||||| || Sbjct 1115 CCGCCGTCCTT-TAGCGATTCCTAGTCACCTAATTCTTTCGCCAAGTCAACTTCCTCAAC 1173 Query 133407 GGTCCAAAA 133415 ||||||||| Sbjct 1174 GGTCCAAAA 1182 >seq4071 Length=35431 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || || || || | || ||||| ||| Sbjct 35264 ATGCAGATTTTTGTCAAGACACTGACCGGTAAGACTATTACGTTGGAGGTCGAACCCAGT 35205 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | | || | || |||| ||||||||||| || || | ||||| Sbjct 35204 GACTCGATTGAGAATG-TCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCACCAGACCA 35146 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | || || | ||| ||||| || || || || | |||||||| ||||||||| Sbjct 35145 ACAGAGACTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAA 35086 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || || |||| |||||| ||||||||||| | | ||||| Sbjct 35085 TATTCAGAAAGAGTCGACCCTGCATCTGGTGCTGCGTCTTCGTGGCGG 35038 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||||||||| || || | |||||||| | || || | ||| || ||| Sbjct 35408 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAACAAAGACTGATCTTCGCCGGTAAA 35349 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | |||||||| |||||||||||| |||||||| |||| |||||| Sbjct 35348 CAACTCGAGGATGGTCGCACCCTTTCCGACTACAACATTCAAAAGGAGTCGACCCTGCAT 35289 Query 38448 TTGGTGCTGCG 38458 |||| |||| Sbjct 35288 CTGGTCTTGCG 35278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499817814859520