Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1361 125 3e-23 seq13394 118 4e-21 seq4712 104 9e-17 seq15210 100 1e-15 seq11402 98.7 4e-15 seq4728 96.9 1e-14 seq7809 89.7 2e-12 >seq1361 Length=61718 Score = 125 bits (138), Expect = 3e-23 Identities = 244/356 (69%), Gaps = 11/356 (3%) Strand=Plus/Plus Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTG 451304 ||||||| ||||| || ||||| || |||||||||||||| || || || | | Sbjct 51530 CTGAAGAGATTTCCTCAATGGTGCTAGTGAAAATGAAAGAAACCGCGGAGGCCTACCTAG 51589 Query 451305 GTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 || | || ||||| || || || ||||| || || |||||||| ||| ||||| | Sbjct 51590 GTAAGACGGTCACTGACGCTGTCATCACTGTCCCTGCCTATTTCAACGATAGCCAACGCC 51649 Query 451365 AAGCAACTAAAGATGCAGGA--CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 |||| || ||||| |||||| ||||| | ||| | || ||||| || |||||||| || Sbjct 51650 AAGCTACGAAAGACGCAGGAACCATAT--CCGGTCTTAACGTTCTGCGCATTATTAACGA 51707 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAA--Gaaaaa 451480 ||| || || ||||| |||| || ||||| | || | ||| | | | ||| Sbjct 51708 ACCGACGGCCGCTGCGATAGCTTACGGACTCG----ATAAGAAG-GTCGGCACCGAACGC 51762 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || | || | || || | || || || ||| |||| || | || || || || Sbjct 51763 AACGTGCTAATCTTCGACCTCGGCGGGGGTACTTTTGATGTGTCCATTCTCTCCATCGAG 51822 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||||| | |||||||| ||| ||||| || || ||||| || || ||||| || Sbjct 51823 GATGGCATCTTTGAAGTCAAGTCAACCGCCGGGGACACTCACCTGGGGGGTGAGGA 51878 >seq13394 Length=10745 Score = 118 bits (130), Expect = 4e-21 Identities = 428/664 (64%), Gaps = 13/664 (2%) Strand=Plus/Minus Query 450948 GTGTAGGTGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAA 451007 |||| ||||||| | |||||||| ||| |||||||| || |||||||| ||| |||| Sbjct 2322 GTGTTGGTGTTTTCAAAAATGGACGTGTTGAAATTATCGCGAATGACCAGGGAAACCGAA 2263 Query 451008 CTACTCCTTCATGGGTAAGTTT---TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTA 451064 ||| || || | || || |||||| || | || |||| | ||||| | Sbjct 2262 TTACACCCTCTTACGTTGCCTTCTCTACGGAAAACGAGCGTCTGATAGGTGATGCTGCCA 2203 Query 451065 AATCAAT--GGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGG 451122 || ||| | | | |||||| | ||||||| | | ||| || || || | || || Sbjct 2202 AA--AATCAGTTGACGTCAAATCCAGAAAACACTCTCTTTGACGCCAAGCGACTGATAGG 2145 Query 451123 CCGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGT 451182 | || || | || ||| ||| | |||| | | | | | | ||| | Sbjct 2144 GAGGGAGTTCTCCGACCCTGAGGTCCAAGCAGACATAAAAAGATATCCCTTTAAAGTAAT 2085 Query 451183 AAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGC 451242 | | || ||||||||||| | |||| || || |||| || | || || Sbjct 2084 TGAGAAGAATCGAAAGCCCTATCTGGAAGTCAACGTCGGTGGAGAAATGAAGGCCTTCGC 2025 Query 451243 TCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATAT 451302 |||||| ||||| || ||||||| ||| | ||||| ||| || || ||| | Sbjct 2024 TCCTGAGGAAATCTCTGCTATGGTCCTTGGGCACATGAAGCAAATTGCTGAGGCTTATTT 1965 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 || | ||| ||| |||| || || |||||||| || || ||||| ||||| || || Sbjct 1964 GGGGACCAAAGTCACTCATGCTGTTATAACTGTTCCAGCCTACTTCAACGATGCTCAGCG 1905 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 || |||| ||||| || || |||| ||||| | ||||| | || || || || || Sbjct 1904 TCAGTCAACCAAAGACGCTGGTGTTATTTCTGGTCTTAATGTGTTGCGGATAATCAACGA 1845 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482 ||||| ||||| || | || || ||| | ||| || || || | || || || Sbjct 1844 GCCTACGGCAGCGGCAATTGCTTACGGA-TTGGACAA--GAAGGA---GGGTGAGAAGAA 1791 Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542 ||| | || || ||| | || || || || |||| |||| | | | || || | Sbjct 1790 TATCCTGGTGTTCGATCTAGGCGGTGGCACCTTTGATGTTTCTCTGATGACTATCGATAA 1731 Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 || || ||||| || || |||| ||| ||||| ||||| ||||| |||||| | || Sbjct 1730 CGGAGTTTTTGAGGTCCTTGCCACCAGTGGCGATACGCATCTTGGAGGGGAAGATTTCGA 1671 Query 451603 TAAT 451606 | || Sbjct 1670 TCAT 1667 >seq4712 Length=32064 Score = 104 bits (114), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 9/210 (4%) Strand=Plus/Minus Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTG 451304 ||||||| ||||| || ||||| || ||||||||||||| ||||| || | | Sbjct 2166 CTGAAGAGATTTCCTCAATGGTGCTAGTGAAAATGAAAGAAAACGCAGAGGCCTACCTAG 2107 Query 451305 GTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 || || ||||| || || || ||||| || || |||||||| ||| ||||| | Sbjct 2106 GTAAGATGGTCACTGAAGCTGTTATCACTGTCCCTGCCTATTTCAACGATAGCCAACGCC 2047 Query 451365 AAGCAACTAAAGATGCAGGA--CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||| ||||| |||||| ||||| | ||| | || ||||| ||||||||||| || Sbjct 2046 AAG-----AAAGACGCAGGAACCATAT--CCGGTCTTAACGTTCTGCGAATTATTAACGA 1994 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| || || |||| |||| || ||||| Sbjct 1993 ACCGACGGCCACTGCGATAGCTTACGGACT 1964 >seq15210 Length=8810 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || ||||| || || || ||||| | || Sbjct 1329 ATGCAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1388 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||| || | | || || ||||||||||| || || || ||||| || ||| Sbjct 1389 GACTCCATCGAGAATGTAAAGGCCAAGATTCAAGATAAAGAGGGTATCCCTCCAGACCAA 1448 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | || ||||| || ||||||||| | ||| || ||||||||||| Sbjct 1449 CAGCGGCTTATATTCGCTGGCAAACAGCTCGAAGATGGACGTACTCTGTCGGATTATAAT 1508 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || || ||| | || | ||||| Sbjct 1509 ATTCAAAAGGAGTCCACTCTACACCTGGTCCTCAGACT 1546 >seq11402 Length=13503 Score = 98.7 bits (108), Expect = 4e-15 Identities = 324/501 (65%), Gaps = 2/501 (0%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || ||||| |||||||| ||||| || ||||| || || || ||||| | ||| Sbjct 4542 AACCCGGATGAGGCTGTTGCCTATGGAGCAGCAGTGCAGGCTGCCATTCTGTCGGGTGAC 4483 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | | || | ||| ||||| | | ||||| | || || || || || | Sbjct 4482 AAGCACGAGGTGGTGCAGGATCTTCTGCTGTTGGATGTGGCGCCGCTGTCGCTGGGTCTG 4423 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAA 452170 || || || |||||| ||||||||| || || |||||| || | ||||| || Sbjct 4422 GAGACTGCCGGTGGAGTGATGACTACCTTGATCAAACGAAATACCACAATTCCGACGAAG 4363 Query 452171 AAGAGTCAAACATTTAGTACAGCAAGTG-ATAACCAACCAGGTGTAACTATTCAAGTGTT 452229 ||| || ||||| | || | | | | | ||||| |||||||| ||||||||||| Sbjct 4362 CAGACGCAGACATTCACCAC-GTACGCGGACAACCAGCCAGGTGTGCTTATTCAAGTGTA 4304 Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 || || || || || ||||| ||||| || ||| ||| || | ||| | || Sbjct 4303 CGAGGGTGAGCGAGCGATGACGCGAGACAACAATCTACTGGGCAAGTTTGAGTTGTCGGG 4244 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 |||||| ||| || | || || || || || |||||| || | ||||| || Sbjct 4243 CATTCCGCCTGCACCTCGTGGCGTGCCGCAGATAGAGGTTACCTTCGACATAGATGCCAA 4184 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAAT 452409 || || || ||||| || ||| || || | || || || | || ||||| || Sbjct 4183 CGGCATCCTGAATGTTTCGGCTTGTGACAAGTCTACGGGCAAGTCGAACAAGATTACCAT 4124 Query 452410 TACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGA 452469 || || ||||| ||| | || || || || |||||| ||||| | || || || Sbjct 4123 CACCAACGATAAGGGTCGTCTGTCAAAGGATGACATTGAACGGATGGTGCAGGAGGCGGA 4064 Query 452470 AAAATTCAAGGATGATGATGA 452490 || | |||| || ||||| Sbjct 4063 CAAGTACAAGTCGGAGGATGA 4043 Score = 93.3 bits (102), Expect = 2e-13 Identities = 238/360 (66%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| ||| ||||| || | ||||| || || | || ||||| | || ||||||| Sbjct 5448 AATCCCACAAACAGTGTGTTCGATGCCAAGCGCCTCATCGGCCGCAAGTTTGATGATCCG 5389 Query 451142 ACTGTACAAAAAGAGAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAA 451197 ||||| || | || | || ||| | ||| ||||| ||||| ||||| Sbjct 5388 ACTGTGCAGAGCGATATGAAGCATTGGCCATTCC----ATGTAATAAATGTGGGTGGAAA 5333 Query 451198 GCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTC 451257 ||| | || || || | | || ||||| || || |||| ||||| || || || Sbjct 5332 GCCGAAGATCCAGGTGGAATTCAAGGGTGAGACGAAGGCTTTCTTCCCTGAGGAGATCTC 5273 Query 451258 ATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTAC 451317 ||||||||| || || ||||| || || || ||| || | ||| | | || || Sbjct 5272 ATCTATGGTGCTGCTGAAGATGAAGGAGACGGCCGAAGCCTACTTGGGTCATTCGGTAAC 5213 Query 451318 TGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 |||||||| |||||||||| || || |||||||||| || || || || || || || Sbjct 5212 GGATGCAGTGGTTACTGTTCCTGCCTACTTCAATGATGGTCAGCGCCAGGCCACAAAGGA 5153 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || ||| | || | || || ||||| || || || || || || || || || Sbjct 5152 TGCTGGCACGATTTCGGGCCTGAACGTCCTTCGTATCATCAACGAGCCGACGGCTGCAGC 5093 >seq4728 Length=31981 Score = 96.9 bits (106), Expect = 1e-14 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 451243 TCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATAT 451302 ||| ||||||||||| | || | || | || |||||||| | | || ||||| Sbjct 27020 TCCGGAAGAAATTTCTGCCCTGCTGCTCATGAAGATGAAAGAGATTTCCGAGTTGTATAT 27079 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 ||| |||||||| || || || || || || || || | ||||||||| |||||| Sbjct 27080 TGGAGAACCAGTTACCGAGGCTGTTATCACAGTACCTGCGTGCTTCAATGATAAACAACG 27139 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 || || || || ||||| | | ||| |||||||| || || || || | |||||||| Sbjct 27140 TCAGGCTACCAAGGATGCCGCAACTATGGCTGGTTTGAAGGTCCTCCGGCTCATTAATGA 27199 Query 451423 ACCTACAGCAGCT-GCTCTAGCATATGGACTAGGAAA 451458 ||| |||| ||| || |||| || ||||| | ||| Sbjct 27200 GCCTTCAGC-GCTCGCAATAGCCTACGGACTCGAAAA 27235 >seq7809 Length=21078 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || ||||| |||||||| || ||||| | Sbjct 13836 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTAGAGGTTGAGCCCAGC 13895 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | | || ||||| || || ||||||||||| || || |||||| Sbjct 13896 GACTCGATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCAA 13955 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | |||| ||| | || |||||||| || ||||| | || | | ||||| || Sbjct 13956 CAAAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 14015 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | ||||| || |||| Sbjct 14016 ATTCAGAAAGAGTCTACACTGCATCTAGT 14044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974281127840024