Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=258522 Score = 107 bits (118), Expect = 2e-18 Identities = 196/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 11595 ACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT 11654 ||| ||||||||| |||||||||||| | || | || || || | || | | || Sbjct 18390 ACCATCCATTTCTACGAGAAGCTGGTTAAGGGTGTTCTCGCGTTCCTGGT--GCCCGAAT 18447 Query 11655 -ACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACG 11713 | | | |||||||||| ||||| ||||||||||| |||||||| | ||| || | Sbjct 18448 GAGGAGC--CCGAACGCTTGCCACCGATGGCGTCAATCTCGTCGATGAAGAGGATGCAGG 18505 Query 11714 GTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGA 11773 | || || || ||||| || | ||||| || || |||| |||||||| || | Sbjct 18506 GCGCCTTTGCGCGGGCCTGGGAAAACATGTCACGAACGCGTTTCGGGCCAACACCAACAA 18565 Query 11774 ACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCG 11832 |||| |||| ||| | || || | || || | |||||| || |||| |||||||||| Sbjct 18566 ACATTTCAAGGAA-CTCGCTGCCTGAGACAGACAGGAAGGGCACGTTAGCCTCACCAGCG 18624 Query 11833 ATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 |||| || || | |||||| || || || |||| ||| Sbjct 18625 GTGGCCTTGGCTAGCAAAGTCTTTCCAGTGCCGGGTGGACC 18665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588557989008400