Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2636 95.1 1e-14 >seq2636 Length=44840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || || ||||| ||| || |||||||| ||| | || Sbjct 42547 GCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGCTGAATGTCAATCCC 42606 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| || || |||||||||||||| | |||| |||| || |||||||| ||||| | Sbjct 42607 GGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCA-AACGACCCGGAAAAGAAAAC 42665 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGT---C 117449 ||||| || ||||| |||| || ||||| | || | | ||||| | || | Sbjct 42666 CCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG---GACTTCGAGTCACC 42722 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTG 117500 || |||||| | |||||| | |||||||||| | ||| |||| ||||| Sbjct 42723 AATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTTTG 42773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589562075876720