Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7809 100 2e-16 seq4071 93.3 3e-14 >seq7809 Length=21078 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| || ||||| |||||| | || |||| || || ||||| || ||||| Sbjct 13342 TCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAA 13283 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| || ||||| |||| | ||||| ||||| || || |||||| || Sbjct 13282 ATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTAGCTTTGAC--AT 13225 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| || | | ||||| || | || || ||||| || || | ||||||| Sbjct 13224 TCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCA 13165 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 13164 CAAAGATCTGCAT 13152 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || || || || | || |||| || || ||||| ||||| || Sbjct 14026 TCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAG 13967 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||||| ||| || ||| | || | || |||||||| || || || || || Sbjct 13966 ATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTGGCCTTCAC--AT 13909 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| || | || |||||| || | || || ||||| || || | ||||| | Sbjct 13908 TCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTGCCTGTCAACGTCTTGA 13849 Query 34969 CAAAGATCTGCAT 34981 | || |||||||| Sbjct 13848 CGAAAATCTGCAT 13836 >seq4071 Length=35431 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| || ||||| |||||| | || |||| || || || || || || || Sbjct 35074 TCTTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAG 35133 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| || |||||| | || | ||||| ||||| ||||| ||||| || Sbjct 35134 ATCAGTCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCCTGGATCTTAGCCTTGAC--AT 35191 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| |||| || || || || | || || || || || || || ||||| | Sbjct 35192 TCTCAATCGAGTCACTGGGTTCGACCTCCAACGTAATAGTCTTACCGGTCAGTGTCTTGA 35251 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 35252 CAAAAATCTGCATA 35265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324408959432784