Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2636 199 4e-46 seq5746 178 1e-39 seq28812 105 8e-18 >seq2636 Length=44840 Score = 199 bits (220), Expect = 4e-46 Identities = 416/619 (67%), Gaps = 33/619 (5%) Strand=Plus/Plus Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 ||||| |||| | ||| ||||| ||| || || || || || | ||||| | |||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 || ||||| || || ||||| || || | || || |||||||| ||||| ||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 || || |||||||| | || ||||| || ||||| |||||||| | ||| | || | Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG 42708 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG---- 19181 | | | | ||||||||| |||||||||||||||||||| || ||||| || Sbjct 42709 GACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGG 42768 Query 19182 ----------CATTG---------TCTCTATA---GAATTAAAT---AGATACATA--CG 19214 ||||| || ||| | ||| ||| ||| | || || Sbjct 42769 GTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCG 42828 Query 19215 CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATT 19274 || || || |||| ||| | ||| || | | | |||||||| || |||||||| Sbjct 42829 TTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATT 42888 Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA 19334 ||| || || ||||| || || || || || | ||||| | ||||||||||| || Sbjct 42889 TTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACT 42948 Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 || | ||| || | |||||||||||||||||| || || || ||||||||||| | || Sbjct 42949 GAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGAC 43008 Query 19395 ATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAG 19453 || | ||| || || || || | | || | | ||| ||| ||| | || || | Sbjct 43009 ATATGAAATGAAGTGCTTCTC-GCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCG 43067 Query 19454 ATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATA 19513 || || ||||| ||||| |||||||| |||||| | || || || || | | ||| | Sbjct 43068 CCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGA 43127 Query 19514 TATCACGATATTGTATAGG 19532 | ||| |||| || || || Sbjct 43128 TGTCATGATACTGGATGGG 43146 >seq5746 Length=27722 Score = 178 bits (196), Expect = 1e-39 Identities = 369/545 (68%), Gaps = 12/545 (2%) Strand=Plus/Plus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGACA 48163 |||||||| || || ||||| |||||||| || ||| ||| || || || ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACA-ATCGAATAGACCTGGACA 14279 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 || | |||| ||||| || ||| | || | || || || | ||| |||| || Sbjct 14280 CTCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTC 14339 Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283 || ||||| ||||| || | ||| | || ||| ||| ||| |||| | ||| | Sbjct 14340 AGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTT 14399 Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTAC 48343 || || | ||| | || || || | ||||||||||| | || ||||| | | Sbjct 14400 ACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGC 14459 Query 48344 ACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAA 48403 ||| || || || || || || ||||| | || | ||| || ||||||||||| | | Sbjct 14460 ACCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAG 14519 Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCT 48463 |||||| || | |||||| ||| ||||| ||||||| ||| || | || || ||| Sbjct 14520 CATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACC-CTTGCT-- 14576 Query 48464 TATATTACTAATTGAA-----ATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518 | || | |||| | ||| || ||||| || |||| ||||| || |||||| Sbjct 14577 --TCGTATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACAC 14634 Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 | || | || |||||||| || || || || ||||| ||||| | | || ||||| Sbjct 14635 TGCTTCAAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAA 14694 Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || |||||||| || || || || | ||||||| || || ||||||||| ||||| Sbjct 14695 CTGGACATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAAC 14754 Query 48639 CATTT 48643 || || Sbjct 14755 CACTT 14759 >seq28812 Length=1987 Score = 105 bits (116), Expect = 8e-18 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| || || ||||||||||| || || ||||| || || || || || | ||||| Sbjct 958 TACATCTCCGAGTGAATATTTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCG 1017 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||||||||||| ||| || | ||| || | ||||||||| |||||||| ||| | Sbjct 1018 GA-ATCTGTACTTCTTTACTGAAGCGTTCCACAAGATTTTCATTGACTATTCCGTCATTT 1076 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTC 19434 || ||||||||||| | |||| | ||| || || | | | | || | |||| Sbjct 1077 GCGGCAAAAAATGCGAGGACATATGAAATTAA--GTGCTCCCGCCGTCCTTTAGCGATTC 1134 Query 19435 C-AATCA-TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482 | | ||| |||| ||||| | || || ||||| ||||| ||||||||| Sbjct 1135 CTAGTCACCTAAT-TCTTTCGCCAAGTCAACTTCCTCAACGGTCCAAAAA 1183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561709857331920