Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq11402 143 2e-28 seq1361 138 9e-27 seq1814 132 4e-25 seq14672 109 4e-18 seq13394 102 7e-16 >seq11402 Length=13503 Score = 143 bits (158), Expect = 2e-28 Identities = 363/547 (66%), Gaps = 4/547 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || || || || ||||| || ||||||||||| | ||| | || || Sbjct 5616 GCTATTGGCATCGACTTGGGCACCACTTACTCCTGTGTTGGTGTGTTTCAACACGGCAAG 5557 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || ||||| | || || || ||||| | ||||| Sbjct 5556 GTGGAGATCATCGCCAACGACCAGGGTAATCGCACAACGCCCAGCTATGTGGCCTTCACC 5497 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | | || || || || ||| | || | || ||||| || || Sbjct 5496 GATACCGAGCGTCTCATCGGCGACGCCGCGAAAAACCAGGTGGCTATGAATCCCACAAAC 5437 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 | | | || ||||| || || | || || | | ||| ||||| ||||||| ||| Sbjct 5436 AGTGTGTTCGATGCCAAGCGCCTCATCGGCCGCAAGTTTGATGATCCGACTGTGCAGAGC 5377 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| ||||| | | ||||| |||||| || | | | || | Sbjct 5376 GATATGAAGCATTGGCCATTCCATGTAATAAATGTGGGTGGAAAGCCGAAGA-TCCAGGT 5318 Query 550292 ACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | |||| | | || ||| | || || | || ||||||||||| | | Sbjct 5317 GGAATTCAAGGGTGAGACGAAGGCTTTCTTCCCTGAGGAGATCTCATCTATGGTGCTGCT 5258 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 ||| ||||| | || ||| || | | ||||| || ||||||||||| | || Sbjct 5257 GAAGATGAAGGAGACGGCCGAAGCCTACTTGGGTCATTCGGTAACGGATGCAGTGGTTAC 5198 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTG 550469 ||| || || || || ||||| || || || || || || |||||||| ||| ||| Sbjct 5197 TGTTCCTGCCTACTTCAATGATGGTCAGCGCCAGGCCACAAAGGATGCTGGCACG-ATTT 5139 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || || || || |||||||| ||||| || || || ||||| || |||| || || Sbjct 5138 CGGGCCTGAACGTCCTTCGTATCATCAACGAGCCGACGGCTGCAGCCATTGCCTACGGTT 5079 Query 550530 TTGATAA 550536 | ||||| Sbjct 5078 TGGATAA 5072 >seq1361 Length=61718 Score = 138 bits (152), Expect = 9e-27 Identities = 366/551 (66%), Gaps = 10/551 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||||| || ||||| | || |||||||| | || | || || Sbjct 51198 AGCTGTCGGAATTGATTTGGGTACCACCTTCTCCTGCGTTGGTGTCTTCCAGCACGGAAA 51257 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| |||||||| || || || || | || || || ||||| | ||||| Sbjct 51258 GGTAGAAATAATTGCCAACGACCAGGGCAATCGCACAACGCCTAGCTATGTCGCATTCAC 51317 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTAC 550167 || ||||| | | | || ||||| || | | |||| ||| || || || | Sbjct 51318 CGACACTGAGCGCCTCATCGGGGATGCCGCTAGGAACCAAGTGGCCA-TG--AACCCGTC 51374 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 ||||| | || ||||| ||||| | ||||| || | ||| |||| | |||| || Sbjct 51375 GAATACCGTCTTCGATGCCAAACGCCTGATTGGCCGACGCTTTGATGACCCCGCTGTCCA 51434 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | ||| |||||| ||||| ||| ||| | ||| | ||| ||||| | || || Sbjct 51435 GAGCGATGCGAAGCACTGGCCCTTCACGATTATCAATTCTGGTGGCAAACCAAAGATCGA 51494 Query 550288 AG-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 || | | | | ||| |||||||| | ||| | ||||| || ||||| Sbjct 51495 AGTCGAGTACCGG-GGAGAGAAAAAACAATTCAATGCTGAAGAGATTTCCTCAATGGTGC 51553 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTA 550405 || ||||||||||| |||| || || | | ||| |||| || || || || || Sbjct 51554 TAGTGAAAATGAAAGAAACCGCGGAGGCCTACCTAGGT-AAGACGGTCACTGACGCTGTC 51612 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || ||||| || || ||||| || || ||||| |||||||| ||||| || ||| Sbjct 51613 ATCACTGTCCCTGCCTATTTCAACGATAGCCAACGCCAAGCTACGAAAGACGCAGGAACC 51672 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || | || ||||| ||||| || ||||| || ||||| || || ||||| | || || Sbjct 51673 ATATCCGGTCTTAACGTTCTGCGCATTATTAACGAACCGACGGCCGCTGCGATAGCTTAC 51732 Query 550526 GGACTTGATAA 550536 ||||| ||||| Sbjct 51733 GGACTCGATAA 51743 >seq1814 Length=54398 Score = 132 bits (146), Expect = 4e-25 Identities = 344/517 (67%), Gaps = 8/517 (2%) Strand=Plus/Plus Query 550024 TTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAG 550083 ||||||||| || | || | || || || ||||| |||||||||||||| |||||| | Sbjct 12046 TTGTGTTGGCGTCTTCCAGCACGGAAAGGTAGAAATCATTGCCAATGATCAGGGTAACCG 12105 Query 550084 AACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 || || || |||||| | |||||||| || |||| | | |||| || || || || Sbjct 12106 CACAACGCCCAGCTATGTTGCCTTCACGGACACCGAACGTCTCATTGGAGACGCGGCGAA 12165 Query 550144 ATATCA--AGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 | |||| | || || || || |||| || | |||||||| || || | || || Sbjct 12166 AAATCAGGTGGCAATG--AACCCCTCCAACACGGTGTTTGATGCGAAGCGCCTGATCGGT 12223 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 ||| |||| ||||| |||| || |||| || ||||| || ||||| ||| | || Sbjct 12224 AGACGTTTCGATGATCCGACGGTGCAGGGCGACATGAAACACTGGCCCTTCACTGTAGTG 12283 Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321 ||| ||| || || | ||||| | | || || || ||||| Sbjct 12284 AATTCCGGTGGTAAGCCGAAAATTGAGGTTGAGTATCGTGGTGAGAAGAAGCAATTCAGC 12343 Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 | || | || || |||||||| | |||| ||||| | || | | | | | || Sbjct 12344 GCTGAGGAGATCTCCTCTATGGTGCTGGTGAAGATGAAGGAGAC-GGCTGAGGCCTACTT 12402 Query 550382 GGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 || |||||| || ||||| || || | || || ||||| || || || || ||||| Sbjct 12403 GGGCAAGAAGGTGACGGACGCGGTGGTGACGGTGCCAGCCTACTTCAACGATAGTCAACG 12462 Query 550441 TCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 ||| || || || || ||||| ||| ||| | || | ||||| || ||||| || || | Sbjct 12463 TCAGGCGACCAAGGACGCTGGTACG-ATTTCAGGCATGAATGTGCTGCGTATAATTAACG 12521 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 | || || ||||| || | || || || || ||||| Sbjct 12522 AGCCAACAGCTGCCGCCATCGCCTACGGTCTGGATAA 12558 >seq14672 Length=9339 Score = 109 bits (120), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 550024 TTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAG 550083 ||||||||| || | || | || || || ||||| |||||||||||||| |||||| | Sbjct 4550 TTGTGTTGGCGTCTTCCAGCACGGAAAGGTAGAAATCATTGCCAATGATCAGGGTAACCG 4609 Query 550084 AACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 || || || |||||| | |||||||| || |||| | | |||| || || || || Sbjct 4610 CACAACGCCCAGCTATGTTGCCTTCACGGACACCGAACGTCTCATTGGAGACGCGGCGAA 4669 Query 550144 ATATCA--AGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 | |||| | || || || || |||| || | |||||||| || || | || || Sbjct 4670 AAATCAGGTGGCAATG--AACCCCTCCAACACGGTGTTTGATGCGAAGCGCCTGATCGGT 4727 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||| |||| ||||| | || || |||| || ||||| || ||||| ||| Sbjct 4728 AGACGTTTCGATGATCCCACGGTGCAGGGCGACATGAAACACTGGCCCTTC 4778 >seq13394 Length=10745 Score = 102 bits (112), Expect = 7e-16 Identities = 304/463 (66%), Gaps = 12/463 (3%) Strand=Plus/Minus Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAG 552172 |||||||||| ||||||||||| ||||| | ||||| || |||| | || | ||| Sbjct 1377 ATGAAATTGTCCTTGTTGGTGGTTCTACCCGCATTCCCAAGATTCAGCAGCTGGTCAAAG 1318 Query 552173 TTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTA 552232 | || ||| | ||| || || | | || |||| || |||||||| || ||||| Sbjct 1317 AT-TTCTTTGA-TGGCAAGGAACCTAGTCGTGGTATTAACCCTGATGAGGCCGTCGCCTA 1260 Query 552233 TGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAA-ACTACAAAATA 552291 ||| || || | || || | |||| || ||| || ||||| ||| | || Sbjct 1259 TGGCGCTGCTGTCCAGGCTGGTATTATTGGTGG------TGCGGAAAACACTGGTGA-TA 1207 Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 |||| | | || ||| |||||| | || ||| |||| || || ||||| | |||| Sbjct 1206 TTGTCTTATTGGACGTTTGTCCTCTGACCCTGGGTATAGAGACCGTAGGAGGCGTCATGA 1147 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 |||| ||||| ||||||| || ||| || || | | || |||||||| Sbjct 1146 CTAAGCTTATTCCACGAAATACCGTGATCCCTACGAAGAAGGCACAAGTCTTTTCTACAG 1087 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 | | || ||||| | | || || || || ||| ||||| ||| | | || | Sbjct 1086 CTGCTGACAATCAGCCGACCGTCACCATCCAGGTTTACGAAGGCGAACGCCTGATGACAA 1027 Query 552472 AAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAG 552531 | |||||| || ||||| | ||| | | || || || || ||||| || || | Sbjct 1026 AGGATAATCATTTCCTTGGCAAGTTTGACCTGACTGGAATCCCCCCGGCTCCCCGCGGTG 967 Query 552532 TACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 | || ||||||||||||||||| || | |||| ||||| || Sbjct 966 TTCCTCAAATTGAAGTTACTTTTGAGGTGGATGTGAATGGCAT 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026293323291220