Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2636 93.3 5e-14 >seq2636 Length=44840 Score = 93.3 bits (102), Expect = 5e-14 Identities = 359/568 (63%), Gaps = 37/568 (7%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| ||||| | ||| ||||| ||| || | |||||||| | ||||| | |||||| Sbjct 42531 TTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATT 42590 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 || || ||||| ||||| | || | || || | ||| || || | ||||| || Sbjct 42591 GCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGA 42650 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACG---TGTACCGAAAGT 37339 || |||||||||| || || || || ||||| || || ||||| || | ||||| Sbjct 42651 CCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGA---AAAGT 42707 Query 37340 TGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT 37399 || | | ||| ||||||||| || |||||| ||||| || ||||| | Sbjct 42708 GGACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAG 42767 Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGttttt--------------------------ttC- 37432 |||| | || || || || |||| | | | Sbjct 42768 GGTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACC 42827 Query 37433 -TTCACTA---TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488 ||| | || | ||||| ||||| || || | | ||||||||| |||||||||| Sbjct 42828 GTTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATAT 42887 Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAA 37548 |||| || || ||||| || ||||| || || | ||||| | | || || || | | Sbjct 42888 TTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGAC 42947 Query 37549 AAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 || | | | | |||||||||||||| || || || || ||||| || || || | Sbjct 42948 TGAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGA 43007 Query 37609 CATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTG 37668 ||||| || || || | || | | || || ||| ||| | || || | Sbjct 43008 CATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCG 43067 Query 37669 ATAAATCAACTTCATCAACGGTCCAAAA 37696 || |||||||| |||||||||||||| Sbjct 43068 CCAAGTCAACTTCCTCAACGGTCCAAAA 43095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591896417959120