Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2636 87.8 3e-12 seq5746 86.0 1e-11 >seq2636 Length=44840 Score = 87.8 bits (96), Expect = 3e-12 Identities = 225/342 (66%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 48001 GTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCAC 48060 ||||||||| || ||| ||| || | ||| | || ||||| ||| || || | || Sbjct 42417 GTTCATGCCAATCAGGTCCACAGGAAGAGCGTCAGTAAGAAATTCCACTTCGATGTCAAC 42476 Query 48061 GGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGC 48120 ||||||| || ||||| | |||||| || || || ||||| | | ||| ||| Sbjct 42477 AGCTTCCCGCATAATCTTTTCAACGCGCTCCTTAGACGGCTTGTTTCTGATGTGTTTGAA 42536 Query 48121 ATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGA 48180 | || || |||||||| |||| | ||||| || ||||| || || | ||| Sbjct 42537 CAAAAGA---CAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGCT 42593 Query 48181 GAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCC 48240 ||| | || ||||| | ||| | || || | |||||| || | ||| || || || Sbjct 42594 GAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGACCC 42653 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT 48300 || ||||| | ||||| || || || || || || | |||| |||| | || Sbjct 42654 GGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTGGACTT 42713 Query 48301 CTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTT 48342 | ||| ||||| ||| ||||| || ||||||||||| Sbjct 42714 CGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTT 42755 >seq5746 Length=27722 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/236 (68%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 213820 GCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCA 213879 ||||||| | ||| || | ||| || || ||| || || | | || | || || Sbjct 14327 GCATGAATAAGTCAGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAG 14386 Query 213880 CTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGT 213939 | |||| ||| || || || || | ||| | | |||||| | |||||| || |||| || Sbjct 14387 CGCCAGTGTTCTTACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGT 14446 Query 213940 AGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGT 213996 | || |||||||| || |||| |||| || ||||| || || || ||| ||| Sbjct 14447 AAATTGCAAAGGCACCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGT 14506 Query 213997 TGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATA 214052 | | | |||||| | || |||| || ||||| | ||| || |||||||||||| Sbjct 14507 TATAAACGCGCAGCATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATA 14562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930871667883520