Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5746 100 5e-16 >seq5746 Length=27722 Score = 100 bits (110), Expect = 5e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 221981 AGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGC 222040 || ||||||||| | ||| |||||| |||| | | ||| |||| || | || Sbjct 14269 AGACCTGGACACTCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGC 14328 Query 222041 ATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG-TCCGCTGCTCCTCCAC 222099 ||||| | ||| || ||||| || ||||| |||||||| | | || | | ||||| | Sbjct 14329 ATGAATAAGTCAGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTT-TCCTCAGC 14387 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||| || | || |||| ||||| | ||||| | |||||| || ||||| || Sbjct 14388 GCCAGTGTTCTTACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTA 14447 Query 222160 GACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 | || | || ||||| |||||||| ||||||||||| || Sbjct 14448 AATTGCAAAGGCACCGGGCCGCTTGTTTCCACCCTGATCAAC 14489 Score = 96.9 bits (106), Expect = 6e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 |||||||| |||||||| ||| || || || ||||| || | |||||||||||||||| Sbjct 13978 ATCTCTGTGCAGAGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGA 14037 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTC 221859 ||| ||||||||||| ||||| || ||| ||||||||| Sbjct 14038 TTGCACGCGTCCTTGTACAGCATGAAAGGATTGCCAGTCTC 14078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928185575624320