Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1361 199 3e-45 seq1814 149 4e-30 seq13394 122 6e-22 seq14672 116 2e-20 seq7809 93.3 3e-13 >seq1361 Length=61718 Score = 199 bits (220), Expect = 3e-45 Identities = 375/545 (69%), Gaps = 6/545 (1%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || |||||||| || || || | | || || | ||| | || | || || |||||| Sbjct 51205 GGAATTGATTTGGGTACCACCTTCTCCTGCGTTGGTGTCTTCCAGCACGGAAAGGTAGAA 51264 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 ||||||||||| ||||| || ||| | ||||| || ||||| | || || || ||| Sbjct 51265 ATAATTGCCAACGACCAGGGCAATCGCACAACGCCTAGCTATGTCGCATTCACCGACACT 51324 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | || || || ||||| |||| | |||| || || || ||||| | Sbjct 51325 GAGCGCCTCATCGGGGATGCCGCTAGGAACCAAGTGGCCATGAACCCGTCGAATACCGTC 51384 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || ||||| ||| | ||||||| || |||||||| || ||||||| ||| | Sbjct 51385 TTCGATGCCAAACGCCTGATTGGCCGACGCTTTGATGACCCCGCTGTCCAGAGCGATGCG 51444 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAATAC 474632 || ||||| || | | | || ||| |||||| |||||| | || |||| | ||| Sbjct 51445 AAGCACTGGCCCTTCACGATTATCAATTCTGGTGGCAAACCAAAGATCGAAGTCGAGTAC 51504 Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692 || || || | |||||||| | ||| | ||||| |||||||| ||| |||| Sbjct 51505 -CG-GGGAGAGAAAAAACAATTCAATGCTGAAGAGATTTCCTCAATGGTGCTAGTGAAAA 51562 Query 474693 TGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACTGTT 474751 ||||| |||||||| | || || || |||| || ||||| || || || ||||| Sbjct 51563 TGAAAGAAACCGCGGAGGCCTACCTAGG-TAAGACGGTCACTGACGCTGTCATCACTGTC 51621 Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811 || || ||||| || ||| ||||| ||||| || ||||| || |||| || | ||| Sbjct 51622 CCTGCCTATTTCAACGATAGCCAACGCCAAGCTACGAAAGACGCAGGAACCATATCCGGT 51681 Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGAT 474871 ||||| ||| | || |||||||| ||||| || || || || | ||||| || || ||| Sbjct 51682 CTTAACGTTCTGCGCATTATTAACGAACCGACGGCCGCTGCGATAGCTTACGGACTCGAT 51741 Query 474872 AAGAA 474876 ||||| Sbjct 51742 AAGAA 51746 >seq1814 Length=54398 Score = 149 bits (164), Expect = 4e-30 Identities = 372/554 (67%), Gaps = 12/554 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || || ||| | || || || | | |||||| | || | || | || || Sbjct 12014 GCAGTCGGAATCGATCTCGGCACGACCTTCTCTTGTGTTGGCGTCTTCCAGCACGGAAAG 12073 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| ||||||||||| || ||||| | ||||| || |||||| | || || Sbjct 12074 GTAGAAATCATTGCCAATGATCAGGGTAACCGCACAACGCCCAGCTATGTTGCCTTCACG 12133 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| ||| |||||||| || || ||| |||| | ||| || || || Sbjct 12134 GACACCGAACGTCTCATTGGAGACGCGGCGAAAAATCAGGTGGCAATGAACCCCTCCAAC 12193 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | |||||||| || | |||| ||| | ||| |||||| | || || || Sbjct 12194 ACGGTGTTTGATGCGAAGCGCCTGATCGGTAGACGTTTCGATGATCCGACGGTGCAGGGC 12253 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 || ||| || ||||| || | || | ||| |||||||| || | || || | Sbjct 12254 GACATGAAACACTGGCCCTTCACTGTAGTGAATTCCGGTGGTAAGCCGAAAATTGAGGTT 12313 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCG--GAACAAATTTCTTCAATGGTTTT 474684 | || || ||||| | || ||| |||| || || | || || || ||||| | Sbjct 12314 GAGTA-TCG-TGGTGAGAAGAAGCAA--TTCAGCGCTGAGGAGATCTCCTCTATGGTGCT 12369 Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTA 474742 | || ||||| | || || ||| | || ||||| |||||| || || || || || Sbjct 12370 GGTGAAGATGAAGGAGACGGCTGAG-GCCTA-CTTGGGCAAGAAGGTGACGGACGCGGTG 12427 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || ||||| || || || ||| ||||||||| || || || || || || | Sbjct 12428 GTGACGGTGCCAGCCTACTTCAACGATAGTCAACGTCAGGCGACCAAGGACGCTGGTACG 12487 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||| |||| | ||||| | ||||| ||||| || |||||||| ||||| | || || Sbjct 12488 ATTTCAGGCATGAATGTGCTGCGTATAATTAACGAGCCAACAGCTGCCGCCATCGCCTAC 12547 Query 474863 GGTCTTGATAAGAA 474876 ||||| |||||||| Sbjct 12548 GGTCTGGATAAGAA 12561 >seq13394 Length=10745 Score = 122 bits (134), Expect = 6e-22 Identities = 259/381 (68%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 || |||||||| || || || ||||| ||||||||||| || | |||| | ||| Sbjct 1282 AACCCTGATGAGGCCGTCGCCTATGGCGCTGCTGTCCAGGCTGGTATTATTGGTGGTG-- 1225 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTG-ACGTAACTCCACTTTCATTAGGTCT 475911 | || | | ||| | ||||||| ||| ||| |||| ||| || | | ||| | Sbjct 1224 -CGGA--AAACACTGG-TGATATTGT-CTTATTGGACGTTTGTCCTCTGACCCTGGGTAT 1170 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 || || || ||||| | |||||||| |||||| ||||||| ||||| || Sbjct 1169 AGAGACCGTAGGAGGCGTCATGACTAAGCTTATTCCACGAAATACCGTGATCCCTACGAA 1110 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 || || |||| ||||| || | |||| ||||| | || || |||||||| | | Sbjct 1109 GAAGGCACAAGTCTTTTCTACAGCTGCTGACAATCAGCCGACCGTCACCATCCAGGTTTA 1050 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||| ||| | | || || |||||| | ||||| | ||| | || || Sbjct 1049 CGAAGGCGAACGCCTGATGACAAAGGATAATCATTTCCTTGGCAAGTTTGACCTGACTGG 990 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || || |||||| | || |||||||||||||||||||||||||| | |||| || Sbjct 989 AATCCCCCCGGCTCCCCGCGGTGTTCCTCAAATTGAAGTTACTTTTGAGGTGGATGTGAA 930 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| || |||| || ||||| Sbjct 929 TGGCATCCTTAGGGTAACTGC 909 Score = 109 bits (120), Expect = 4e-18 Identities = 343/523 (66%), Gaps = 9/523 (2%) Strand=Plus/Minus Query 474360 GTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATA 474419 || |||| | ||||| ||||||| || ||||| || || |||||||| || || Sbjct 2325 GTAGTGTTGGTGTTTTCAAAAATGGACGTGTTGAAATTATCGCGAATGACCAGGGAAACC 2266 Query 474420 GAACAACACCATCATATGTTTCTTT---TACTGAAACTGAACATCTTATTGGAGATGCTG 474476 ||| ||||| || || ||| | || ||| |||| || | ||| || || ||||||| Sbjct 2265 GAATTACACCCTCTTACGTTGCCTTCTCTACGGAAAACGAGCGTCTGATAGGTGATGCTG 2206 Query 474477 CTAAATATCAAGCTG-CATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATT 474535 | ||| |||| | || | || ||||| | || ||| | ||||| || || || |||| Sbjct 2205 CCAAAAATCA-GTTGACGTCAAATCCAGAAAACACTCTCTTTGACGCCAAGCGACTGATA 2147 Query 474536 GGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTG 474595 || | | || || | |||||| | || || | || ||||| || Sbjct 2146 GGGAGGGAGTTCTCCGACCCTGAGGTCCAAGCAGACATAAAAAGATATCCCTTTAAAGTA 2087 Query 474596 ATAAATGTTGGTGGTAAACCATATATAGAAGCAATACACGCAGGTGAAACTAAACAATTT 474655 || | | | || || ||| | |||| | || || |||| || || Sbjct 2086 ATTGAGAAGAATCGAAAGCCCTATCTGGAAGTCAACGTCGGTGGAGAAATGAAGGCCTTC 2027 Query 474656 TCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATA 474714 | || || |||| ||| | ||||| | | | ||||| |||| || ||| | || Sbjct 2026 GCTCCTGAGGAAATCTCTGCTATGGTCCTTGGGCACATGAAGCAAATTGCTGAGG-CTTA 1968 Query 474715 TCTTGG-ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTC 474773 | | || || | |||| ||| |||| || || ||||||||||| || || || ||| ||| Sbjct 1967 TTTGGGGACCA-AAGTCACTCATGCTGTTATAACTGTTCCAGCCTACTTCAACGATGCTC 1909 Query 474774 AACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTA 474833 | ||||| |||| ||||| || || ||| | ||||||||||| || || || || | Sbjct 1908 AGCGTCAGTCAACCAAAGACGCTGGTGTTATTTCTGGTCTTAATGTGTTGCGGATAATCA 1849 Query 474834 ATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || || || ||||| ||| ||||||| || | || ||||| Sbjct 1848 ACGAGCCTACGGCAGCGGCAATTGCTTACGGATTGGACAAGAA 1806 >seq14672 Length=9339 Score = 116 bits (128), Expect = 2e-20 Identities = 328/493 (67%), Gaps = 12/493 (2%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 ||| |||| | || || ||| | || || || | | |||||| | || | || | | Sbjct 4513 GAAATGCAGTCGGAATCGATCTCGGCACGACCTTCTCTTGTGTTGGCGTCTTCCAGCACG 4572 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || |||||||| ||||||||||| || ||||| | ||||| || |||||| | | Sbjct 4573 GAAAGGTAGAAATCATTGCCAATGATCAGGGTAACCGCACAACGCCCAGCTATGTTGCCT 4632 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | || || || |||| ||| |||||||| || || ||| |||| | ||| || || Sbjct 4633 TCACGGACACCGAACGTCTCATTGGAGACGCGGCGAAAAATCAGGTGGCAATGAACCCCT 4692 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || | |||||||| || | |||| ||| | ||| |||||| |||| || | Sbjct 4693 CCAACACGGTGTTTGATGCGAAGCGCCTGATCGGTAGACGTTTCGATGATCCCACGGTGC 4752 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | || ||| || ||||| || | || | ||| |||||||| || | || | Sbjct 4753 AGGGCGACATGAAACACTGGCCCTTCACTGTAGTGAATTCCGGTGGTAAGCCGAAGATCG 4812 Query 474624 AAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCG--GAACAAATTTCTTCAATG 474679 | | | || || ||||| | || ||| |||| || || | || || || ||| Sbjct 4813 AGGTTGAGTA-TCG-TGGTGAGAAGAAGCAA--TTCAGCGCTGAGGAGATCTCCTCTATG 4868 Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATG 474737 || | | || ||||| |||| || ||| | || ||||| |||||| || || || | Sbjct 4869 GTGCTGGTGAAGATGAAGGAAACGGCTGAG-GCCTA-CTTGGGCAAGAAGGTGACGGACG 4926 Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 | || | || || ||||| || || || ||| ||||||||| || || || || || | Sbjct 4927 CGGTGGTGACGGTGCCAGCCTACTTCAACGATAGTCAACGTCAGGCGACCAAGGACGCTG 4986 Query 474798 GAAGAATTGCAGG 474810 | | ||| |||| Sbjct 4987 GTACGATTTCAGG 4999 >seq7809 Length=21078 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || ||||| |||||| ||||| || || ||||||| || || Sbjct 14057 ACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGT 13998 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || ||||| || || || || || || | ||||||||| || || ||||| Sbjct 13997 GCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCC 13938 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || || || || ||| ||||| | || || | | || || Sbjct 13937 TTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAG 13878 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| || || | ||||| |||||||| || Sbjct 13877 AGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTG 13839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265743716093144