Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2636 95.1 1e-14 seq6944 87.8 2e-12 >seq2636 Length=44840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 65002 CAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTG---ACACA 65058 ||||| |||| ||| | |||||||||| | |||||| | |||||| ||| || | Sbjct 42773 CAAACCCTACCTTGTGTGAAGAAGAAGGCTGATTGGGCACTTAAATGGATTGGTGACTCG 42714 Query 65059 AAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTC 65118 ||||| | | || | ||||| || |||| ||||| || ||||| | ||||| Sbjct 42713 AAGTC---CACTTTTCCAGAGCGTCTAGTTGCCTTTGCTGCCGTAGAGGGGGTTTTCTTT 42657 Query 65119 TCCGGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATG 65177 |||||||| || |||| |||| | |||||||||||||| || || ||||| || | Sbjct 42656 TCCGGGTCGTT-TGCGTCTATCTTCTGGTTGAAGAAGCGTGGGCTTATGCCGGGATTGAC 42598 Query 65178 CTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||| |||||||| || ||| ||||| || || ||| || ||||| Sbjct 42597 ATTCAGCAATGAACTAATAAGCCGTGATGAAGGGCTTCACACTGACTTTGC 42547 >seq6944 Length=23626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 177554 ACATTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAG 177613 || |||||||||||| || ||| | ||| |||||||| | || || || || || | | Sbjct 4109 ACTTTTCAACAAACTCCCGCACTGTGTGAGTCTCCCCAGACGAGATGACGTAATCGACTG 4050 Query 177614 CCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGT 177673 || | ||||| |||||||||||||| || | ||||| |||| ||| | |||||||| Sbjct 4049 GTTCCTTCTGTTGTAGCATGAGCCACATTGCGTAGACATAATCCTCGGCGTAACCCCAGT 3990 Query 177674 CTCTGGCAGCGTTGAGGTTACCGAGTTC 177701 | | ||| || ||||| || || || Sbjct 3989 CGCGTTTAGCATTCAGGTTTCCCAGCTC 3962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596146199640640