Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7809 114 3e-20 seq15210 91.5 3e-13 >seq7809 Length=21078 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | ||| |||| |||| ||| | |||| |||||| || || |||||||| Sbjct 14063 ACCGCCACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGA 14004 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||||||||| || ||||||| ||| |||||||| || || Sbjct 14003 GAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGG 13944 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || || || ||||| || ||||| || || || | || || Sbjct 13943 GATTCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13884 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| ||||| || || || || || | || |||||||| Sbjct 13883 CTCTAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13836 >seq15210 Length=8810 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 192334 TGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 |||| ||| | ||| ||| || ||||||||||| || | || ||| |||| || | || Sbjct 1531 TGTAGAGTGGACTCCTTTTGA-ATATTATAATCCGACAGAGTACGTCCATCTTCGAGCTG 1473 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 ||| ||||| || || | | |||||| || || || || || ||||||||||| || || Sbjct 1472 TTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCTTTATCTTGAATCTT 1413 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 |||||||| || || || || | || || || || || || || || || || Sbjct 1412 GGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTCCCTGT 1353 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | || || | |||||||||||| Sbjct 1352 GAGGGTCTTGACAAATATCTGCAT 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983763822180300