Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7809 104 4e-17 >seq7809 Length=21078 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || | ||| | || | ||| || |||||| || || Sbjct 13381 ATGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCG 13322 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| ||||||||||| | || ||||||||| || Sbjct 13321 GAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGC 13262 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || |||||| ||| ||||| || | || | ||| Sbjct 13261 GGGATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCA 13202 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| ||||| ||||| ||||| || | || |||||||| Sbjct 13201 ACTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| |||| |||| ||| | |||| |||||| ||| || ||||| || Sbjct 14063 ACCGCCACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGA 14004 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || || | ||||||||| || || |||| ||| ||||| || || || Sbjct 14003 GAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGG 13944 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT--AGTATCTGACGATTCT 172019 |||||||| || || || ||||| || ||||| || ||| ||| | || Sbjct 13943 GATTCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTG--GGCTCA 13886 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| ||||| || || || || || | ||| |||||||| Sbjct 13885 ACCTCTAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Score = 93.3 bits (102), Expect = 8e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || | ||| | || | ||| || |||||| || || Sbjct 13609 ATGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCG 13550 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| ||||||||||| | || ||||||||| || Sbjct 13549 GAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGC 13490 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT--AGTATCTGACGATT 172017 || ||||| ||||| || || |||||| || ||||| || ||| ||| | | Sbjct 13489 GGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTG--GGCT 13432 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || |||||||| ||||| || || || || || | ||| |||||||| Sbjct 13431 CAACCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 93.3 bits (102), Expect = 8e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || | ||| | || | ||| || |||||| || || Sbjct 13837 ATGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCG 13778 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| ||||||||||| | || ||||||||| || Sbjct 13777 GAAAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGC 13718 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT--AGTATCTGACGATT 172017 || ||||| ||||| || || |||||| || ||||| || ||| ||| | | Sbjct 13717 GGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTG--GGCT 13660 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || |||||||| ||||| || || || || || | ||| |||||||| Sbjct 13659 CAACCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904493602352400