Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11815 91.5 4e-13 seq2105 86.0 2e-11 >seq11815 Length=12900 Score = 91.5 bits (100), Expect = 4e-13 Identities = 243/364 (67%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||| |||||| ||| || | ||| | | ||||||| || |||| ||| || Sbjct 5239 ATTTCGAACGGTCCCATCGTATTTGACCATGACGGATTCCATAGCTTTAATTAGACGGCG 5180 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || |||||||| ||| | || || ||||| ||||| || ||||| |||||||||| Sbjct 5179 TTGGATATAACCGGTTTCGGCCGTCTTCACAGCAGTATCGATGAGACCTTCACGACCACC 5120 Query 302658 CATAGCATGGAAGAATAGCTC--TTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 ||| || || ||||| | || | |||| || || ||| | | ||| | ||||| Sbjct 5119 CATGGCGTGAAAGAAAAATTCAGTAGGGGTC--AGACCAGCAAGATAAGAGTTTTCAACA 5062 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTC 302774 || || | | ||| || || || | |||| |||||||||| || || | || Sbjct 5061 AATCCCCTGGACTCCGGACCATAATC-ATCTTGAATAAAGTGTGGTAGAGTTCGGTGACG 5003 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | || | || || ||||| || || |||||||| || || | || | || | ||| Sbjct 5002 GAAACCAAAAGGAATTCGCTTGCCTTCTACGTTCTGTTGACCGACACAGGCGATAACCTG 4943 Query 302835 CGAAATATTTAAATCAC-TGCCCTTGGAGCCAGCATTTACCATAATAACAAACCTGTTAT 302893 |||||| |||| | | ||||||||||| || ||||| || ||| |||||| Sbjct 4942 CGAAAT-GTTAATGCGCGAACCCTTGGAGCCCGCCACGACCATTATGTTAAAGTTGTTAT 4884 Query 302894 TCTT 302897 ||| Sbjct 4883 ACTT 4880 >seq2105 Length=50492 Score = 86.0 bits (94), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||||||| | |||| || ||||||||||| |||||||| || || ||||||||||| Sbjct 30351 TGCACCGTGGGCAATCTGGCAGTCACGCTCCATCTCACCGAACCGGAGGCCACCATCGCG 30410 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | | |||||| ||||| ||| ||||| | | || || | | ||| || Sbjct 30411 ACTGCGACCCTCCATGGGCTGGCGATTGAGAATCTGTACGGGGCCACGAGCTCTGCTGTG 30470 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCT 251663 ||| |||| |||||| ||||| || || || ||| | | || |||| |||||| Sbjct 30471 AATCTTGTCATCTACCATGTGCTTCAGGCGTTGATAGTAGGTCGGGCCGAGGAAGATTTG 30530 Query 251664 CGAAGGCA-TTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCC 251711 ||| || |||| | || || | |||| ||||||| ||||| || Sbjct 30531 CGAGTTCAGCTTGCGC-CCCGTGAAGCCGTTGTACATAATCTCGTTGCC 30578 Score = 86.0 bits (94), Expect = 2e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||| |||||||| ||||| ||||||||||||||||| || ||| | | || | Sbjct 33840 CGATGGTCATTCGACTGGGGATAGCGTGGGGATTGATGATGATATCCGGTGTGATGCCTT 33899 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCG 251961 | |||||| |||||||||| | || |||| | | || |||||||| || ||| Sbjct 33900 CGCAAGTGAACGGCATATCCTCCT-GTCGATAAAGAATACCGCATGTTCCCTTCTGACCG 33958 Query 251962 TGACGA 251967 |||||| Sbjct 33959 TGACGA 33964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470746899610186