Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7809 109 5e-19 seq15210 107 2e-18 seq4071 105 6e-18 seq13246 84.2 2e-11 >seq7809 Length=21078 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || ||||| ||||| | ||||| ||| | | | Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || ||| || ||||| |||||||| ||||| || || || ||| Sbjct 13212 GACTCGATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13271 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || ||||| || || ||| | | | | || || || || Sbjct 13272 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13331 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| ||||| || || | || ||||| | || || ||| Sbjct 13332 ATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTCCGTGGTGGC 13379 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| | || || ||||| ||||| || || || || ||| | Sbjct 13380 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13439 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| |||||||| ||||| || || || ||| Sbjct 13440 GACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13499 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || ||||| || || ||| | | | | || || || || Sbjct 13500 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13559 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| ||||| || || | || ||||| | || || ||| Sbjct 13560 ATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTCCGTGGTGGC 13607 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| | || || ||||| ||||| || || || || ||| | Sbjct 13608 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13667 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| |||||||| ||||| || || || ||| Sbjct 13668 GACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13727 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || ||||| || || ||| | | | | || || || || Sbjct 13728 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAAT 13787 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| ||||| || || | || ||||| | || || ||| Sbjct 13788 ATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTCCGTGGTGGC 13835 >seq15210 Length=8810 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || ||||| || ||||| || || | | Sbjct 1329 ATGCAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1388 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | ||||| ||||| ||||| ||||| || || ||||| || ||| Sbjct 1389 GACTCCATCGAGAATGTAAAGGCCAAGATTCAAGATAAAGAGGGTATCCCTCCAGACCAA 1448 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || || || || |||||||| || ||| | | |||| |||||||| Sbjct 1449 CAGCGGCTTATATTCGCTGGCAAACAGCTCGAAGATGGACGTACTCTGTCGGATTATAAT 1508 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || |||||| |||| | || | ||||| || Sbjct 1509 ATTCAAAAGGAGTCCACTCTACACCTGGTCCTCAGACTTCGCGGCGG 1555 >seq4071 Length=35431 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| || || || || || |||||| | ||||||| ||||| ||| Sbjct 35408 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAACAAAGACTGATCTTCGCCGGTAAA 35349 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || |||||| | | | | || || || |||||||||||||| ||||| || || Sbjct 35348 CAACTCGAGGATGGTCGCACCCTTTCCGACTACAACATTCAAAAGGAGTCGACCCTGCAT 35289 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 |||| |||||| | || || || Sbjct 35288 CTGGTCTTGCGACTCCGTGGTGG 35266 >seq13246 Length=10935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || ||||| ||||| || |||||||| || || || || || Sbjct 134 ACAATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACTATTACTCTGGAGGTTGAGCCC 75 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| || | || | || || ||||||||||||||||| || || || || || Sbjct 74 AGTGACTCAATCGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGAC 15 Query 24821 CAACAACGTTTGAT 24834 |||||| | |||| Sbjct 14 CAACAAAGACTGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449578296425840