Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq14157 136 6e-26 seq15933 131 3e-24 >seq14157 Length=9876 Score = 136 bits (150), Expect = 6e-26 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| ||||||||||| ||||||| || || ||| Sbjct 1448 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGTTTGGCCAGCTCACCAGGCA 1389 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 || ||| | ||||| ||||||||||| | | || || || ||||| |||| Sbjct 1388 AGAGCAGCCTAACGGCAGTCTGGATCTCTCTGCTGGTAATAGTCGACTTCTTGTTGTAGT 1329 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | | ||||||| | ||| | |||| | |||| |||||||| || || ||||| Sbjct 1328 GAGAG--AGGCGGCTAGACTCCGCTGCGATTCTCTCGAAGATGTCGTTCACGAAAGAGTT 1271 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | ||| ||||| ||| || ||||| ||||| || ||||| Sbjct 1270 CATGATGGACATGGCTTTCGAAGAGATTCCCGTATCAGGGTGAACCTGACGAAGGACCTT 1211 Query 1485708 GTA 1485710 ||| Sbjct 1210 GTA 1208 >seq15933 Length=8147 Score = 131 bits (144), Expect = 3e-24 Identities = 176/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| ||||||||||| |||||| || || ||| Sbjct 2451 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGTTTGGCCAACTCACCCGGCA 2392 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 || ||| | ||||| ||||||||||| | | || || || ||||| || | Sbjct 2391 AGAGCAGCCTAACGGCCGTCTGGATCTCTCTGCTGGTAATAGTCGACTTCTTGTTGTAAT 2332 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | | ||||||| | ||| | |||| | |||| |||||||| || || ||||| Sbjct 2331 GAGAG--AGGCGGCTAGACTCTGCTGCGATTCTCTCGAAGATGTCGTTCACGAAGGAGTT 2274 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | ||| |||||||| ||||| || ||||| ||| ||||| Sbjct 2273 CATGATTGACATAGCTTTCGATGAGATGCCAGTATCGGGATGGACCTGACGGAGGACCTT 2214 Query 1485708 GTA 1485710 ||| Sbjct 2213 GTA 2211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910206665175542