Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4071 125 5e-24 seq7809 107 1e-18 seq15210 104 2e-17 >seq4071 Length=35431 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | ||| ||| |||||||| || ||||| || ||| |||| |||| Sbjct 35052 CAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATC 35111 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| || ||||||||||||| || |||||| | || | ||||| ||||| Sbjct 35112 CTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTC 35171 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || ||||| ||| ||| ||||| || | || || Sbjct 35172 CTGGATCTTAGCCTTGAC--ATTCTCAATCGAGTCACTGGGTTCGACCTCCAACGTAATA 35229 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || ||||| ||||| |||||||| Sbjct 35230 GTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||||| || | ||| |||||| |||||||| ||||| || ||| |||| |||| Sbjct 35280 CAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGACCATC 35339 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || |||||||||||||||| ||| |||||| | || | ||||| ||||| Sbjct 35340 CTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATGCCCTCTTTGTC 35399 >seq7809 Length=21078 Score = 107 bits (118), Expect = 1e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || || ||| || || | ||| |||||| ||||| || ||||| || ||| |||| | Sbjct 13367 CCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCC 13308 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || ||||| || || || || |||||||| || ||||| |||| | ||||| || Sbjct 13307 ATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTT 13248 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTT 34939 ||| | ||||| |||||| || || ||||| || | | || || || | || Sbjct 13247 GTCCTGGATTTTAGCTTTGAC--ATTCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTA 13190 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || || || || || | ||||| |||||||||||||||| Sbjct 13189 ATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATGA 13150 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| || || || || |||| |||| || ||||| || |||||||| Sbjct 14027 CTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAA 13968 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||| || ||| | || | || |||||||| | ||||| || || | Sbjct 13967 GATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTGGCCTTCAC--A 13910 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || ||||| || ||| ||| || || | || || || || || || | ||||| Sbjct 13909 TTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTGCCTGTCAACGTCTTG 13850 Query 34964 ACAAAGATCTGCATG 34978 || || ||||||||| Sbjct 13849 ACGAAAATCTGCATG 13835 >seq15210 Length=8810 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||||||| | ||| |||||| ||||| ||||| ||||| || | || || Sbjct 1543 CTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGACAGAGTACGTCCA 1484 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || || || || ||||| || || || || |||||| | || | ||||| || Sbjct 1483 TCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCTTTA 1424 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTA 34940 || | || || || || || || || || || | ||| || || | ||||| Sbjct 1423 TCTTGAATCTTGGCCTTTAC--ATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTTA 1366 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | ||||| || ||||||||||| ||||| ||||||||| Sbjct 1365 TAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGCATG 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325467426485582