Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq7809 100 4e-16 >seq7809 Length=21078 Score = 100 bits (110), Expect = 4e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || ||||| |||||||||||| | || || || | | || Sbjct 13837 TGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTAGAGGTTGAGCCCAGCG 13896 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| || ||||| || || ||||| || || || ||||||| Sbjct 13897 ACTCGATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCAAC 13956 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || || || ||||||||| | || ||| | ||| | | ||||| || | Sbjct 13957 AAAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAACA 14016 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAA 146264 | || ||||| || || | ||| |||| |||| | | || ||| ||||| Sbjct 14017 TTCAGAAAGAGTCTACACTGCATCTAGTGCTACGCCTTCGTGGCGGTTAATAA 14069 Score = 93.3 bits (102), Expect = 7e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || ||||| |||||||||||| | || || || | | || Sbjct 13381 TGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGCG 13440 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| || |||||| || ||||| || || || || || |||| Sbjct 13441 ACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAAC 13500 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| |||||||| || |||||| | || ||| | || | | || || |||| Sbjct 13501 AGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAATA 13560 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || ||||| ||||| | || || || Sbjct 13561 TTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCG 13594 Score = 93.3 bits (102), Expect = 7e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || ||||| |||||||||||| | || || || | | || Sbjct 13609 TGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGCG 13668 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| || |||||| || ||||| || || || || || |||| Sbjct 13669 ACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAAC 13728 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| |||||||| || |||||| | || ||| | || | | || || |||| Sbjct 13729 AGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAATA 13788 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || ||||| ||||| | || || || Sbjct 13789 TTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCG 13822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785608438051760