Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7809 145 6e-30 seq15210 120 2e-22 seq4071 114 1e-20 >seq7809 Length=21078 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| || || || || |||||||| || || || | || |||||| | Sbjct 13366 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCA 13307 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||||||||||||| | |||| || || || |||||||| || ||||||||| Sbjct 13306 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13247 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| ||||||| | || | | ||| | |||| ||||| | ||| || Sbjct 13246 TCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATC 13187 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| || || || ||||| |||||||| Sbjct 13186 GTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| || || || || |||||||| || || || | || |||||| | Sbjct 13594 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCA 13535 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||||||||||||| | |||| || || || |||||||| || ||||||||| Sbjct 13534 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13475 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || ||| | || | | ||| | || || || ||||| || Sbjct 13474 TCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATT 13415 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || || |||||||| Sbjct 13414 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| || || || || |||||||| || || || | || ||| || | Sbjct 13822 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCA 13763 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||||||||||||| | |||| || || || |||||||| || ||||||||| Sbjct 13762 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13703 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || ||| | || | | ||| | || || || ||||| || Sbjct 13702 TCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATT 13643 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || || |||||||| Sbjct 13642 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | ||| || || || ||||| |||||||| ||||| | | ||||| | Sbjct 14050 CGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCA 13991 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| || || | || | |||||| ||||| || || || || || ||| Sbjct 13990 TCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTG 13931 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || ||| | || | | ||| | || || || ||||| || Sbjct 13930 TCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATT 13871 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || || |||||||| Sbjct 13870 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13836 >seq15210 Length=8810 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||| || || ||||| || |||||||| |||||||||| | || || ||| Sbjct 1540 AGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGACAGAGTACGTCCATCT 1481 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| ||||||||||| |||| | | || || || || || ||||||||||| ||| Sbjct 1480 TCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCTTTATCT 1421 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | || ||| | || | | ||| ||| | || || || || |||||||| Sbjct 1420 TG-AATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTTATAGT 1362 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| || |||||||||||||| Sbjct 1361 CTTCCCTGTGAGGGTCTTGACAAATATCTGCAT 1329 >seq4071 Length=35431 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||| ||| || || || ||||| ||||| || || || | || |||||| Sbjct 35049 ACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGGGTGCGGCC 35108 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| |||||||| | |||| ||| || || || || || || |||||||| Sbjct 35109 ATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGGATGCCCTCTTT 35168 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | | |||| |||| || || | || || Sbjct 35169 GTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACCTCCAACGTAAT 35228 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || | || || ||||| |||||||| Sbjct 35229 AGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| |||| ||| || || || || ||||||||||| || || | || ||||||| | Sbjct 35278 CGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGACCA 35337 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| || || | |||| |||||| || || || || || ||||||||| Sbjct 35338 TCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATGCCCTCTTTG 35397 Query 29692 TCTTG 29696 ||||| Sbjct 35398 TCTTG 35402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384952635295698