Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq7809 100 3e-16 seq5746 84.2 2e-11 >seq7809 Length=21078 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || | ||| | || || || ||||| || ||||| ||| Sbjct 13379 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13320 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| |||||||||||||| |||||| | ||||| || || || || || || Sbjct 13319 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13260 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| ||||| ||| | | || | || ||| | ||||| || Sbjct 13259 GATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAAC 13200 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | ||| ||||| |||||||| || || || || ||||| Sbjct 13199 TTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||| ||| | |||||| ||||| || ||||||||||| | |||| || ||| Sbjct 14044 ACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCG 13985 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 ||||||||||| || |||| || | ||| ||||| || || || ||||| ||||| Sbjct 13984 AGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGG 13925 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| || | | || | || ||| |||| || || || | ||| | || ||| Sbjct 13924 ATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTG 13865 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || || ||||| || ||||| Sbjct 13864 CCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || | ||| | || || || ||||| || ||||| ||| Sbjct 13607 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13548 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| |||||||||||||| |||||| | ||||| || || || || || || Sbjct 13547 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13488 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| ||||| || | | || | || ||| |||| || || Sbjct 13487 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13428 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || ||||| ||||| || || ||||| || ||||| Sbjct 13427 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || | ||| | || || || ||||| || ||||| ||| Sbjct 13835 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13776 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | |||||||||||||| |||||| | ||||| || || || || || || Sbjct 13775 AAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13716 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| ||||| || | | || | || ||| |||| || || Sbjct 13715 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13656 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || ||||| ||||| || || ||||| || ||||| Sbjct 13655 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 >seq5746 Length=27722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 205/308 (67%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 151507 CTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCG--TTGAGCTTAGGA 151564 ||| || | | ||||| | | |||||| || || || | |||| | || || ||| Sbjct 14220 CTCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCT--GGA 14277 Query 151565 CACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATA 151624 ||||||| |||| ||| | || ||| || |||| |||| |||||| ||| |||| Sbjct 14278 CACTCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAG 14337 Query 151625 TCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTT 151684 || |||| ||| | || | | | |||||| ||| |||| || || |||| |||| Sbjct 14338 TCAGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTC 14397 Query 151685 CGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGG 151744 ||| | | | || | || ||||| ||||| ||||| | ||| | ||| | Sbjct 14398 TTACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAG 14457 Query 151745 GCGCCTTTTCGCTTG---CCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGC 151801 || || |||||| ||||| ||||| |||| || | | || ||| |||| ||| Sbjct 14458 GCACCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGC 14517 Query 151802 AGCATTGG 151809 |||||||| Sbjct 14518 AGCATTGG 14525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488197268109600