Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7809 176 9e-39 seq15210 149 1e-30 seq13246 104 5e-17 seq4071 89.7 1e-12 >seq7809 Length=21078 Score = 176 bits (194), Expect = 9e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| ||||| ||||| |||||||| || || |||||||| || | | || Sbjct 14050 CGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCA 13991 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| || || ||||||||||||||||||||||| || ||||||||||| Sbjct 13990 TCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTG 13931 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || ||||| ||||||| || | || || || || | ||| || Sbjct 13930 TCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATT 13871 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||||||||||||||| || || |||||||| Sbjct 13870 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || ||||| || || || || | | || ||||| |||||| Sbjct 13354 TGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGT 13295 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || |||| ||||| || || || ||||| || || || || || || Sbjct 13294 TTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTA 13235 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||||| || ||||||| ||||||||||| ||||| ||||| ||| Sbjct 13234 GCTTTGACATTCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATCGTTTTGCCAGTC 13175 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| |||||||| Sbjct 13174 AATGTCTTCACAAAGATCTGCAT 13152 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || ||||| || || || || | | || ||||| |||||| Sbjct 13582 TGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGT 13523 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || |||| ||||| || || || ||||| || || || || || || Sbjct 13522 TTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTA 13463 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||||| || | || || || |||| ||| || || ||||||||| Sbjct 13462 GCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGCCTGTC 13403 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 |||||||| || || |||||||| Sbjct 13402 AACGTCTTGACGAAAATCTGCAT 13380 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || ||||| || || || || | | || ||||| |||||| Sbjct 13810 TGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCATCTTCGAGTTGT 13751 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || |||| ||||| || || || ||||| || || || || || || Sbjct 13750 TTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTA 13691 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||||| || | || || || |||| ||| || || ||||||||| Sbjct 13690 GCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGCCTGTC 13631 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 |||||||| || || |||||||| Sbjct 13630 AACGTCTTGACGAAAATCTGCAT 13608 >seq15210 Length=8810 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| ||||| || || || || ||||||||||| || ||| | | || ||| Sbjct 1540 AGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGACAGAGTACGTCCATCT 1481 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || ||||| ||||| || || || | ||||| |||||||| || || || |||||| Sbjct 1480 TCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCTTTATCT 1421 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || |||||||| || || | || ||| || || || | ||||| ||| Sbjct 1420 TGAATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTC 1361 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| | ||||| |||||||||||||| Sbjct 1360 TTCCCTGTGAGGGTCTTGACAAATATCTGCAT 1329 >seq13246 Length=10935 Score = 104 bits (114), Expect = 5e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || ||||||||||| ||||| || || || || || ||||| ||||| || || ||||| Sbjct 1 ATCAGTCTTTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTC 60 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || | ||| | || || || |||| ||| || |||||||| || | |||||| ||| Sbjct 61 TCGATTGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTGAGCGTCTTGACA 120 Query 82800 AATATCTGCATT 82811 || ||||||||| Sbjct 121 AAGATCTGCATT 132 >seq4071 Length=35431 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||| || || || || || || || || || || || | | ||| || || |||||| Sbjct 35290 TGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGTTGT 35349 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| ||||||||||| ||||| || || || || || ||||| ||||| Sbjct 35350 TTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTG 35409 Query 82728 GCTTTTACATTTTCAAT 82744 || || ||||| || || Sbjct 35410 GCCTTCACATTCTCGAT 35426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981112952007742