Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4071 120 3e-22 seq7809 109 5e-19 seq5746 89.7 5e-13 >seq4071 Length=35431 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| |||||||| ||| | ||| | | | |||||||| | Sbjct 35061 ATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCA-TCCTCGAGTT 35119 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || | ||| ||||| || |||||||| || ||||| ||||| Sbjct 35120 GCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCCTGGATCT 35179 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| || ||| |||| || || || | || | || || |||| Sbjct 35180 TAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACCTCCAACGTAATAGTCTTACCGG 35239 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 35240 TCAGTGTCTTGACAAAAATCTGCAT 35264 >seq7809 Length=21078 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| | |||| | | | |||||||| || || || Sbjct 14032 GTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCA-TCCTCGAGTTGTTTACC 13974 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || | || || || || ||||| ||||||||||| ||| || ||| Sbjct 13973 GGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTGGCCTT 13914 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || |||| ||||||| || || | || | |||||||| |||| || Sbjct 13913 CACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTGCCTGTCAACGT 13854 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||||||||||||| Sbjct 13853 CTTGACGAAAATCTGCATG 13835 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| || || |||||||| ||| | ||| | | | || ||||| | Sbjct 13583 ATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCA-TCTTCGAGTT 13525 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || |||| || ||||| ||||| || ||||| || || ||||| ||| | Sbjct 13524 GTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTT 13465 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| || |||| ||||||| || || | || | |||||||| | Sbjct 13464 TAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGCCTG 13405 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||||||||||||| Sbjct 13404 TCAACGTCTTGACGAAAATCTGCATG 13379 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| || || |||||||| ||| | || | | | || ||||| | Sbjct 13811 ATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCA-TCTTCGAGTT 13753 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || |||| || ||||| ||||| || ||||| || || ||||| ||| | Sbjct 13752 GTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTT 13693 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| || |||| ||||||| || || | || | |||||||| | Sbjct 13692 TAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGCCTG 13633 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||||||||||||| Sbjct 13632 TCAACGTCTTGACGAAAATCTGCATG 13607 >seq5746 Length=27722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 || || || ||||| || ||||| ||||||| || | ||||| || || ||||| | | Sbjct 13927 ATGGACGCGAGATTACAAACGGCAATCTCATCAGGCGAACTGTATTCAACTATCTCTGTG 13986 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 || || || |||||| ||| |||| | | ||||| ||||| ||||||||| Sbjct 13987 CAGAGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGATTGCACGCG 14046 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 ||||||||||||||| | || |||||| || | |||| ||| Sbjct 14047 TCCTTGTACAGCATGAAAGGATTGCCAGTCTCGATTTGCGCTTC 14090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483077704172720