Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq15210 105 2e-17 >seq15210 Length=8810 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||| || |||||||| || || || || | || || || ||| ||| Sbjct 1332 CAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCGGAC 1391 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| |||||| ||||||||||| ||||| || || || ||| || Sbjct 1392 TCCATCGAGAATGTAAAGGCCAAGATTCAAGATAAAGAGGGTATCCCTCCAGACCAACAG 1451 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| ||||| || || ||| | ||||||||| | ||| || | ||||| || | Sbjct 1452 CGGCTTATATTCGCTGGCAAACAGCTCGAAGATGGACGTACTCTGTCGGATTATAATATT 1511 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| ||||| ||||| || | |||||||| Sbjct 1512 CAAAAGGAGTCCACTCTACACCTGGTCCTCAGACTTCG 1549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180961063038538