Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7809 96.9 3e-15 seq5746 91.5 1e-13 seq4071 89.7 5e-13 >seq7809 Length=21078 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | | ||||| |||||||| ||||||||| | ||| || | Sbjct 13366 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCA 13307 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| ||||| || | | | || || |||||||| || || || || || ||||| Sbjct 13306 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13247 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | || | | ||| | || || ||||| | || | | Sbjct 13246 TCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATC 13187 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGAC 132126 ||||| ||||||| || || | || ||||||||||| Sbjct 13186 GTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATGAC 13149 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | | ||||| |||||||| ||||||||| | |||||| | Sbjct 13822 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCA 13763 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| ||||| || | | | || || |||||||| || || || || || ||||| Sbjct 13762 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13703 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| |||| | || | | ||| | ||||| || || | || | Sbjct 13702 TCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATT 13643 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || |||| || || | ||||||||||||| Sbjct 13642 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13607 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | | ||||| |||||||| ||||||||| | ||| || | Sbjct 13594 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCA 13535 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| ||||| || | | | || || |||||||| || || || || || ||||| Sbjct 13534 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13475 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| |||| | || | | ||| | ||||| || || | || | Sbjct 13474 TCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATT 13415 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || |||| || || | ||||||||||||| Sbjct 13414 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13379 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||| || | || || ||| ||||| |||||||||| Sbjct 14029 GACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCG 13970 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 ||||||| | ||||||||||| || || ||||| || || ||||| |||| Sbjct 13969 AAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTGGCCTTCACA 13910 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||| | ||||| || || | || | ||||| || |||| || || Sbjct 13909 TTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTGCCTGTCAACGTCTTG 13850 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 13849 ACGAAAATCTGCATG 13835 >seq5746 Length=27722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 147463 ATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGC 147521 || ||||| ||||| || ||||| |||| || |||| ||||| | || || || | Sbjct 13927 ATGGACGCGAGATTACAAACGGCAATCTCATCAGGCGAA-CTGTATTCAACTATCTCTGT 13985 Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581 ||| ||||| |||||| || ||||| || ||| ||||| || ||||||||||| Sbjct 13986 GCAGAGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGATTGCACGC 14045 Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAA 147628 ||| ||| | |||||| | || ||| ||||||| ||||| ||||| Sbjct 14046 GTCCTTGTACAGCATGAAAGGATTGCCAGTCTCGATTTGCGCTTCAA 14092 >seq4071 Length=35431 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | | | ||||| |||||||||||||||||| | ||| || | Sbjct 35278 CGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGACCA 35337 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || ||||| |||||||||| |||| || | ||||| ||||| || ||||| ||||| Sbjct 35338 TCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATGCCCTCTTTG 35397 Query 132029 TC 132030 || Sbjct 35398 TC 35399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476272937116080