Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7809 120 3e-22 >seq7809 Length=21078 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || ||| || | ||| | || |||||||||||| ||||| |||| Sbjct 13378 CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 13319 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || || || || || ||||| |||| ||||| ||||||| || Sbjct 13318 AGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGG 13259 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| || || | | | | | || |||||| | ||| || Sbjct 13258 ATTCCCTCTTTGTCCTGGAT-TTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAAC 13200 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || |||||||| || ||||| || |||||||| |||||||| Sbjct 13199 TTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || ||| || | ||| | || |||||||||||| ||||| |||| Sbjct 13606 CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 13547 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || || || || || ||||| |||| ||||| ||||||| || Sbjct 13546 AGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGG 13487 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| |||||| ||| || ||||| | | | | || |||||| | || ||| Sbjct 13486 ATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACC 13427 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || ||||| || ||||| || || || || |||||||| Sbjct 13426 TCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || ||| || | ||| | || |||||||||||| ||||| |||| Sbjct 13834 CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 13775 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || || || || || ||||| |||| ||||| ||||||| || Sbjct 13774 AGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGG 13715 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| |||||| ||| || ||||| | | | | || |||||| | || ||| Sbjct 13714 ATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACC 13655 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || ||||| || ||||| || || || || |||||||| Sbjct 13654 TCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450473660512240