Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5746 215 7e-51 seq2636 158 2e-33 seq28812 95.1 2e-14 >seq5746 Length=27722 Score = 215 bits (238), Expect = 7e-51 Identities = 393/570 (69%), Gaps = 8/570 (1%) Strand=Plus/Plus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT---CCAGGA 69552 || |||| ||| || | | ||| ||||| || |||||| || ||| ||| || ||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAA-CA--ATCGAATAGACCTGGA 14277 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 || || | ||| ||||| || |||| ||| | ||| | || ||| ||| |||| Sbjct 14278 CACTCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAG 14337 Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672 || |||||||| ||||| |||||||| | | ||| |||| ||| || || || Sbjct 14338 TCAGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTC 14397 Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 || || || | ||||| || || || | ||||||||||| || || || || | | Sbjct 14398 TTACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAG 14457 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 | || || || || ||||| |||||||| | ||| | ||| ||||| ||||| || | | Sbjct 14458 GCACCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGC 14517 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC- 69851 ||||| |||| | |||||| |||| ||||| ||||| | ||| || | || ||||| Sbjct 14518 AGCATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACC-CTTGCT 14576 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 || || || |||||| || || || || |||| || || || ||||| | Sbjct 14577 TCGTATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTG 14636 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||| || ||||| ||||| ||||| |||| | || || |||| || Sbjct 14637 CTTCAAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACT 14696 Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 ||||||||| | | || || || ||||||| || || ||||| ||||| ||||| Sbjct 14697 GGACATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCA 14756 Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 ||| | || | || | ||| || | ||| Sbjct 14757 CTTTCCGGACATGAGTTCGTAAGTCTAAAT 14786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGA--ATTTGCATATTGTATTATCTCTGTAC 69334 || || ||||||||||| || | ||||| || | || |||| | ||||||||| | Sbjct 13930 GACGCGAGATTACAAACGGCAATCTCATCAGGCGAACTG--TATTCAACTATCTCTGTGC 13987 Query 69335 ATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGT 69394 | || || ||||| || || ||||||| ||| |||||| ||| || || |||| Sbjct 13988 AGAGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGATTGCACGCGT 14047 Query 69395 CCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAG 69445 ||||||| || || || ||| | ||||| || || || | ||| ||||||| Sbjct 14048 CCTTGTACAGCATGAAAGGATTGCCAGTCTCGATTTGCGCTTCAATAATAG 14098 >seq2636 Length=44840 Score = 158 bits (174), Expect = 2e-33 Identities = 408/623 (65%), Gaps = 44/623 (7%) Strand=Plus/Plus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 ||||| |||| | || || |||||| || || || ||||| | || |||| ||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || ||||| | ||| ||||| || |||||||| || | ||| || || | ||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || || |||||||| | || ||||| || ||||| ||||| || | |||| | || | Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTG-GAAAAGT 42707 Query 39782 GTA--TCA--TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCAT 39837 | | || | | ||||| || ||||||||||||| |||||||| |||||||| | Sbjct 42708 GGACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAG 42767 Query 39838 TGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC------------------ACTA-- 39877 |||| || ||||| || || | | | | | | || Sbjct 42768 GGTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACC 42827 Query 39878 -----------TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 || |||| ||| ||||| || | ||| ||||||||| || || || | Sbjct 42828 GTTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATAT 42887 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 |||| || || ||||| || || || || || | ||||| | ||| ||||| ||| || Sbjct 42888 TTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGAC 42947 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 || | ||| | | ||||||||| |||||||| || || |||||||||||||| | | Sbjct 42948 TGAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGA 43007 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATT---TATT-CCAGTCATTGATATCT 40102 ||| | ||| || | || || | ||| || ||| ||||||| | || Sbjct 43008 CATATGAAATGAAGTGCTTCTC----GCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCC 43063 Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || | | || ||||| ||| | |||||||| || ||| | ||||| ||||| | | | Sbjct 43064 TTCGCCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGC 43123 Query 40163 CATATATCACGATATTGTATTGG 40185 || || ||| |||| || || || Sbjct 43124 CAGATGTCATGATACTGGATGGG 43146 Score = 93.3 bits (102), Expect = 6e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 ||||||||||||||||||||||| || || ||||| || ||||||| ||||| |||||| Sbjct 42191 TGGTATTCACCAACGCGTTTCTCAAAGAAGTTAGTCTTTCCTTCCAGAGATATGTTTTCC 42250 Query 39389 ATGAAATCAAACGGATTAGTTGCA 39412 |||||||| || || || || ||| Sbjct 42251 ATGAAATCGAATGGGTTTGTCGCA 42274 >seq28812 Length=1987 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/172 (73%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 || |||| ||| | || || | ||| |||||| || || || || ||||| || || Sbjct 928 TCATTAATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCA 987 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 ||||| || || || || || | ||||| | ||| ||||| ||| || || | |||| Sbjct 988 ATCTGGAAGCCATAGAAGCAACGGGCTTCGG-AATCTGTACTTCTTTACTGAAGCGTTCC 1046 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACAT 40049 | | ||||||||| |||||||| ||| | |||||||||||||| | |||| Sbjct 1047 ACAAGATTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT 1098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 ||| ||||||||||||||||||| | ||| ||||| || ||||||| |||| |||||| Sbjct 313 TGGCATTCACCAACGCGTTTCTCAACAAATTTAGTCTTTCCTTCCAGATATATGTTTTCC 372 Query 39389 ATGAAATCAAACGGATTAGTTGCA 39412 |||||||| || || || || ||| Sbjct 373 ATGAAATCGAATGGGTTTGTCGCA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686421283651920