Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2636 199 3e-46 seq28812 89.7 4e-13 >seq2636 Length=44840 Score = 199 bits (220), Expect = 3e-46 Identities = 410/607 (68%), Gaps = 42/607 (7%) Strand=Plus/Minus Query 43712 CCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACA 43771 || || || ||||||||||| ||||| | ||||| || || ||| ||||||||||| Sbjct 43146 CCCATCCAGTATCATGACATCTGGCAGTTTTACAAGAAGGCGGTGGCTTCATTTTGGACC 43087 Query 43772 GCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAA--ACCACAAG 43829 | || |||||||| ||| | || ||||||| | ||| | |||| || | || Sbjct 43086 GTTGAGGAAGTTGACTTGGCGAAGGACTTAGGTGACTGGGAATCCCTAAAGGACGGCGAG 43027 Query 43830 AAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889 || || || || || | || | || |||||||| ||||||||||| ||||| |||| Sbjct 43026 AAGCAC--TTCATTTCATATGTCCTCGCATTTTTTGCCGCGAGCGACGGAATAGTTAATG 42969 Query 43890 AAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATG 43949 ||||| | || || || |||||||| || | || ||||| || || || |||| Sbjct 42968 AAAATCTTGTAGAACGCTTCAGTCAAGAAGTACAGATTCCGGAAGCCCGTTGCTTCTATG 42909 Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGT 44009 | || || ||||| || ||||||||||| ||||||||||| ||| || || ||||||| Sbjct 42908 GCTTCCAGATTGCAATCGAAAATATTCACTCGGAAATGTATTCTCTCCTCATCGATACGT 42849 Query 44010 ACATCAAAG----ATGGGCACGAGAA--------GC------ATCGAT------------ 44039 | || || | | | ||| || || ||| | Sbjct 42848 ATATTAAGGACCCAATCGAACGGTAATTTCTCTGGCTCTTATTTCGTTTTTAGTGACTTC 42789 Query 44040 -TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 |||| |||||| || |||| ||||| | || | || || || ||||| |||||| Sbjct 42788 CTGTTCAATGCGGTACAAACCCTACCTTGTGTGAAGAAGAAGGCTGATTGGGCACTTAAA 42729 Query 44099 TGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| | || || ||||| ||| || || || || ||||| | || || Sbjct 42728 TGGATTGGTGACTCGAAGTCCACTTTTCCAGAGCGTCTAGTTGCCTTTGCTGCCGTAGAG 42669 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 || |||||||||| || ||||||||| | || || ||||| ||||| || || | ||| Sbjct 42668 GGGGTTTTCTTTTCCGGGTCGTTTGCGTCTATCTTCTGGTTGAAGAAGCGTGGGCTTATG 42609 Query 44216 CCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA-GGCTT-ACATTGCGATT 44273 || || ||||| || ||||| ||||||| ||||||||| ||||| ||| | || | Sbjct 42608 CCGGGATTGACATTCAGCAATGAACTAATAAGCCGTGATGAAGGGCTTCACACT--GACT 42551 Query 44274 TTGCTTG 44280 ||||||| Sbjct 42550 TTGCTTG 42544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 44494 AAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAA 44553 |||||| || ||||| |||||||| || || ||||||| || || ||||| ||||| || Sbjct 42268 AAACCCATTCGATTTCATGGAAAACATATCTCTGGAAGGAAAGACTAACTTCTTTGAGAA 42209 Query 44554 ACGCGTTGGAGAATATCAGCG 44574 ||||||||| ||||| ||||| Sbjct 42208 ACGCGTTGGTGAATACCAGCG 42188 >seq28812 Length=1987 Score = 89.7 bits (98), Expect = 4e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || |||||||| || | ||||| ||||||||||||||| | || || || || Sbjct 1090 GCATTTTTTGCCGCAAATGACGGAATAGTCAATGAAAATCTTGTGGAACGCTTCAGTAAA 1031 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || | || ||||| || || || ||||| || || ||||| || ||||||||| Sbjct 1030 GAAGTACAGATTCC-GAAGCCCGTTGCTTCTATGGCTTCCAGATTGCAATCGAAAATATT 972 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| ||||| ||| || || || | ||| || || || Sbjct 971 CACTCGGAGATGTATTCTCTCCTCATCGACATGTATATTAATGA 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397180967651890