Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7809 129 5e-25 seq15210 89.7 4e-13 seq4071 84.2 2e-11 >seq7809 Length=21078 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||| || | ||| | || || || |||||||||||||||||| Sbjct 13380 TGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGG 13321 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | |||||||| ||||| || || |||| || |||||||| ||||||| Sbjct 13320 AAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCG 13261 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||| || ||| | | || | | ||| | | ||||| Sbjct 13260 GGATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAA 13201 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| | ||| || | |||||| |||| || ||||||||||| ||||| Sbjct 13200 CTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||| || | ||| | || || || |||||||||||||||||| Sbjct 13608 TGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGG 13549 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | |||||||| ||||| || || |||| || |||||||| ||||||| Sbjct 13548 AAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCG 13489 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||| || |||| | || | | ||| ||| |||| Sbjct 13488 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAA 13429 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | |||||| |||| || || || || || ||||| Sbjct 13428 CCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||| || | ||| | || || || |||||||||||||||||| Sbjct 13836 TGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGG 13777 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | |||||||| ||||| || || |||| || |||||||| ||||||| Sbjct 13776 AAAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCG 13717 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||| || |||| | || | | ||| ||| |||| Sbjct 13716 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAA 13657 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | |||||| |||| || || || || || ||||| Sbjct 13656 CCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 >seq15210 Length=8810 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| |||| || || || ||||||||||| || || || | || | |||||| Sbjct 1537 ACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGACAGAGTACGTCCATCTTCG 1478 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || ||| | || || |||||||| || || || | |||||||||||| Sbjct 1477 AGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCTTTATCTTGA 1418 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | | ||| | | ||||| || || ||||||| || Sbjct 1417 ATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTC 1358 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || ||||| || ||||| Sbjct 1357 CCTGTGAGGGTCTTGACAAATATCTGCAT 1329 >seq4071 Length=35431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| ||||||||||||||| | | |||| | Sbjct 35050 CGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCA 35109 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || ||||| || || || ||| | || || | |||||| || || || | |||||||| Sbjct 35110 TCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGGATGCCCTCTTTG 35169 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | || | | ||| ||| ||| || || | || ||| Sbjct 35170 TCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACCTCCAACGTAATA 35229 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || ||||| || || ||||| || |||||| Sbjct 35230 GTCTTACCGGTCAGTGTCTTGACAAAAATCTGCATA 35265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424640353097136