Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2636 86.0 2e-11 >seq2636 Length=44840 Score = 86.0 bits (94), Expect = 2e-11 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 443706 GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTC 443765 ||||| ||||| || ||||||| || || || | || ||| ||| ||| || || Sbjct 42698 GAGCGTCTAGTTGCCTTTGCTGCCGTAGAGGGGGTTTTCTTTTCCGGGTCGTTT-GCGTC 42640 Query 443766 CATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGAT 443825 |||||||||||||| |||||||| ||||||| || |||| || || || ||||| || Sbjct 42639 TATCTTCTGGTTGAAGAAGCGTGGGCTTATGCCGGGATTGACATTCAGCAATGAACTAAT 42580 Query 443826 CAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATC 443883 || || || || || | || ||||| || |||||| | | |||||||||| Sbjct 42579 AAGCCGTGATGAAGGGCTTCACACTGACTTTGCTTGTCTTTTGT---TCAAACACATC 42525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587180536188210