Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2636 91.5 2e-13 >seq2636 Length=44840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || || ||||| ||| || |||||||| ||| | || Sbjct 42547 GCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGCTGAATGTCAATCCC 42606 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| || || |||||||||||||| | |||| |||| || |||||||| ||||| | Sbjct 42607 GGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCA-AACGACCCGGAAAAGAAAAC 42665 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG---CATC 122834 ||||| || ||||| |||| || || || | || | | ||||| | || | Sbjct 42666 CCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG---GACTTCGAGTCACC 42722 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTG 122885 || |||||| | |||||| | |||||||||| | ||| |||| ||||| Sbjct 42723 AATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTTTG 42773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627586269988800