Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5746 129 6e-25 >seq5746 Length=27722 Score = 129 bits (142), Expect = 6e-25 Identities = 308/458 (67%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||| | ||| || ||||| || ||| |||||| || || | | ||||| | Sbjct 14328 CATGAATAAGTCAGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGC 14387 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| |||| ||| ||||| | ||| | || |||||| | |||||| || ||||| || Sbjct 14388 GCCAGTGTTCTTACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTA 14447 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 || || || | ||| |||||| || ||||| | ||||||||||| |||||||| Sbjct 14448 AATTGCAAAGGCACCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTT 14507 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCG-TCCCGTTGATTCGTG 79621 |||| || ||||| || || | || | || | || |||| ||||| | || | Sbjct 14508 ATAAACGCGCAGCATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCT-ATAAAAG 14566 Query 79622 TACCGCTCGC-CCGAATG-TTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGAT 79679 |||| || || || ||| || | || | |||||||| || | || || || Sbjct 14567 TACC-CTTGCTTCGTATGCAGTGAAC-GTTTAGACCGATGCCACCAGCATTTTTTGATAT 14624 Query 79680 GTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGAC 79739 |||| |||| ||| | || || || |||||||| || ||| |||||||||| || Sbjct 14625 AAGCGCACACTGCTTCAAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAG 14684 Query 79740 CAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799 ||| | || || ||||| || || || || ||||| || ||||| |||| || Sbjct 14685 GAGGTAACAACTGGACATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGC 14744 Query 79800 GTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCT 79837 || || || ||||| | ||| || ||||| |||| Sbjct 14745 ATGAGTAAACCACTTTCCGGACATGAGTTCGTAAGTCT 14782 Score = 129 bits (142), Expect = 6e-25 Identities = 305/457 (67%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 19167 AGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACG 19226 |||| ||||| || ||| | |||| || || || || |||| ||||| || |||| Sbjct 14782 AGACTTACGAACTCATGTCCGGAAAGTGGTTTACTCATGCATCGCCCACCCTATTTAACG 14723 Query 19227 CCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCA 19286 | || || || || ||||| || |||| ||| | |||||||||||||||||| Sbjct 14722 CTGGGACCCCTCTGCCTCAAATGTCCAGTTGTTACCTCCTCACTATGAAGGATGACAGCA 14663 Query 19287 TTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTA 19346 |||||||||| || || || | ||| |||| |||| || || || | || || | Sbjct 14662 TTGAGGGCATTTATGACACTTTGAAGCAGTGTGCGCTTATATCAAAAAATGCTGGTGGCA 14603 Query 19347 TCGGGATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG 19404 |||| | || | || | | || || | ||||| || || ||||| || Sbjct 14602 TCGGTCTAAAC-GTTC-ACTGCATACGAAGCAAGGGTACTTTTATAGCGGGAACGAATGG 14545 Query 19405 AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAA 19464 || | || | ||| | || |||||||| ||||| | |||||||| ||| ||||||| | Sbjct 14544 AGAATCCAATGGTTTGGTTCCAATGCTGCGCGTTTATAACAACACAGCCCGGTACGTTGA 14485 Query 19465 CCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGA 19524 ||||| || ||| || || | || || || ||||| || ||||||||| | || Sbjct 14484 TCAGGGTGGAAACAAGCGGCCCGGTGCCTTTGCAATTTACCTGGAACCATGGCACCCAGA 14425 Query 19525 CGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGA 19584 | || || | || | || || || |||| || | ||||| | | ||| || Sbjct 14424 CATCCTGCAGTTTGTGGAGCTCCGTAAGAACACTGGCGCTGAGGAAACCAGAGCTCGTGA 14365 Query 19585 CCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATG 19621 |||||| ||| | |||||||| ||| |||||||| Sbjct 14364 TCTCTTCCAGGCTCTCTGGATTCCTGACTTATTCATG 14328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548135498236320