Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09-
25] 56,778 sequences; 539,424,504 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq5746 129 6e-25
>seq5746
Length=27722
Score = 129 bits (142), Expect = 6e-25
Identities = 308/458 (67%), Gaps = 6/458 (1%)
Strand=Plus/Plus
Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442
|||||| | ||| || ||||| || ||| |||||| || || | | ||||| |
Sbjct 14328 CATGAATAAGTCAGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGC 14387
Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502
||| |||| ||| ||||| | ||| | || |||||| | |||||| || ||||| ||
Sbjct 14388 GCCAGTGTTCTTACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTA 14447
Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562
|| || || | ||| |||||| || ||||| | ||||||||||| ||||||||
Sbjct 14448 AATTGCAAAGGCACCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTT 14507
Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCG-TCCCGTTGATTCGTG 79621
|||| || ||||| || || | || | || | || |||| ||||| | || |
Sbjct 14508 ATAAACGCGCAGCATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCT-ATAAAAG 14566
Query 79622 TACCGCTCGC-CCGAATG-TTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGAT 79679
|||| || || || ||| || | || | |||||||| || | || || ||
Sbjct 14567 TACC-CTTGCTTCGTATGCAGTGAAC-GTTTAGACCGATGCCACCAGCATTTTTTGATAT 14624
Query 79680 GTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGAC 79739
|||| |||| ||| | || || || |||||||| || ||| |||||||||| ||
Sbjct 14625 AAGCGCACACTGCTTCAAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAG 14684
Query 79740 CAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799
||| | || || ||||| || || || || ||||| || ||||| |||| ||
Sbjct 14685 GAGGTAACAACTGGACATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGC 14744
Query 79800 GTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCT 79837
|| || || ||||| | ||| || ||||| ||||
Sbjct 14745 ATGAGTAAACCACTTTCCGGACATGAGTTCGTAAGTCT 14782
Score = 129 bits (142), Expect = 6e-25
Identities = 305/457 (67%), Gaps = 4/457 (1%)
Strand=Plus/Minus
Query 19167 AGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACG 19226
|||| ||||| || ||| | |||| || || || || |||| ||||| || ||||
Sbjct 14782 AGACTTACGAACTCATGTCCGGAAAGTGGTTTACTCATGCATCGCCCACCCTATTTAACG 14723
Query 19227 CCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCA 19286
| || || || || ||||| || |||| ||| | ||||||||||||||||||
Sbjct 14722 CTGGGACCCCTCTGCCTCAAATGTCCAGTTGTTACCTCCTCACTATGAAGGATGACAGCA 14663
Query 19287 TTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTA 19346
|||||||||| || || || | ||| |||| |||| || || || | || || |
Sbjct 14662 TTGAGGGCATTTATGACACTTTGAAGCAGTGTGCGCTTATATCAAAAAATGCTGGTGGCA 14603
Query 19347 TCGGGATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG 19404
|||| | || | || | | || || | ||||| || || ||||| ||
Sbjct 14602 TCGGTCTAAAC-GTTC-ACTGCATACGAAGCAAGGGTACTTTTATAGCGGGAACGAATGG 14545
Query 19405 AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAA 19464
|| | || | ||| | || |||||||| ||||| | |||||||| ||| ||||||| |
Sbjct 14544 AGAATCCAATGGTTTGGTTCCAATGCTGCGCGTTTATAACAACACAGCCCGGTACGTTGA 14485
Query 19465 CCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGA 19524
||||| || ||| || || | || || || ||||| || ||||||||| | ||
Sbjct 14484 TCAGGGTGGAAACAAGCGGCCCGGTGCCTTTGCAATTTACCTGGAACCATGGCACCCAGA 14425
Query 19525 CGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGA 19584
| || || | || | || || || |||| || | ||||| | | ||| ||
Sbjct 14424 CATCCTGCAGTTTGTGGAGCTCCGTAAGAACACTGGCGCTGAGGAAACCAGAGCTCGTGA 14365
Query 19585 CCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATG 19621
|||||| ||| | |||||||| ||| ||||||||
Sbjct 14364 TCTCTTCCAGGCTCTCTGGATTCCTGACTTATTCATG 14328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548135498236320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |