Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5746 132 5e-26 seq3529 123 3e-23 seq6944 100 3e-16 >seq5746 Length=27722 Score = 132 bits (146), Expect = 5e-26 Identities = 345/520 (66%), Gaps = 12/520 (2%) Strand=Plus/Minus Query 53244 AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACG 53303 |||| ||||| | ||| | ||||| ||||| || || |||| ||||| || |||| Sbjct 14782 AGACTTACGAACTCATGTCCGGAAAGTGGTTTACTCATGCATCGCCCACCCTATTTAACG 14723 Query 53304 CTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGA 53363 |||| || || ||||| ||||| || || | ||| | | |||||||||||| | Sbjct 14722 CTGGGACCCCTCTGCCTCAAATGTCCAGTTGTTACCTCCTCACTATGAAGGATGACAGCA 14663 Query 53364 TCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTA 53423 | || ||||| || || || | ||| ||||||| | || || || | ||||| | Sbjct 14662 TTGAGGGCATTTATGACACTTTGAAGCAGTGTGCGCTTATATCAAAAAATGCTGGTGGCA 14603 Query 53424 TCGGTATCCACTGCTCGAACGTCCGTGCGAAC----GGCACACCAATCAAGGGGACGAAC 53479 ||||| | || | || || | | | |||| || || || ||| ||||| Sbjct 14602 TCGGTCTAAAC-GTTC--AC-TGCATACGAAGCAAGGGTACTTTTATAGCGGGAACGAAT 14547 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 || | || |||| | || || ||||| ||||| | |||||||| ||||||||||| Sbjct 14546 GGAGAATCCAATGGTTTGGTTCCAATGCTGCGCGTTTATAACAACACAGCCCGGTACGTT 14487 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 | |||||||| ||||| || | || || || ||||| || || |||||| | Sbjct 14486 GATCAGGGTGGAAACAAGCGGCCCGGTGCCTTTGCAATTTACCTGGAACCATGGCACCCA 14427 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA--TGCGCTGCC 53657 ||||| || ||||| | ||||| ||| ||| || | || || | | ||| | Sbjct 14426 GACATCCTGCAGTTTGTGGAGCTCCGTAAGAACACTGGCGCTGAGGAAACCAGAGCT--C 14369 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 |||| || || ||||| |||||||| ||| | ||||||| | ||| | | ||| Sbjct 14368 GTGATCTCTTCCAGGCTCTCTGGATTCCTGACTTATTCATGCGACGCGTGCAAGATAACG 14309 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 | ||||| |||||| || ||||||| || || || Sbjct 14308 ATAAGTGGACACTGATGGATCCTCACGAGTGTCCAGGTCT 14269 >seq3529 Length=38619 Score = 123 bits (136), Expect = 3e-23 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 118109 TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATG 118168 || || ||||| |||||| | || ||| | ||| |||| ||| | | ||| || || Sbjct 29505 TGCAGGCCGAGAATCTTTATGAGATTGTTGATCTCCGCATTCTCCATTATCTGCTTACTG 29564 Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228 | || || ||||||||| || | ||||||||||| ||||| |||||| | |||||| Sbjct 29565 GAAGCCTCTCGAACGTTGAGCAGTTTACCCCGCAGAGGAAAAACGCCATAGCGGTCACGA 29624 Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATA 118288 || || ||||||||||| |||| ||| | | ||| || ||||| ||||| |||| || Sbjct 29625 CCAACCACGCTCAAGCCCGCAACAGCCAAAGTCTTGGCTGAGTCCCCCTCCGTAAGGATC 29684 Query 118289 AGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTTCGGAACG 118348 || || || | | | | | || ||||| ||| ||||||||||| || || | | Sbjct 29685 AGCGTACAGGCCGCGGAGTTTTTGGTGCCGGCGTCATTGGCATCATCCAGTTTTGGGATG 29744 Query 118349 CCC 118351 ||| Sbjct 29745 CCC 29747 >seq6944 Length=23626 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| |||||| || | |||| ||||| |||| || || || | || |||| | Sbjct 4103 CAACAAACTCCCGCACTGTGTGAGTCTCCCCAGACGAGATGACGTAATCGACTGGTTCCT 4044 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 |||||| |||||||||||||| || | ||| ||||||| |||| |||||||||||| | Sbjct 4043 TCTGTTGTAGCATGAGCCACATTGCGTAGACATAATCCTCGGCGTAACCCCAGTCGCGTT 3984 Query 159059 TGGCATCCATGTTCCCGAGCTCGAT 159083 | |||| || ||| || |||||||| Sbjct 3983 TAGCATTCAGGTTTCCCAGCTCGAT 3959 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 124550 CTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTT 124609 ||| || | ||| |||||||| || | ||| || ||||| |||| ||||||||||| || Sbjct 4042 CTGTTGTAGCATGAGCCACATTGCGTAGACATAATCCTCGGCGTAACCCCAGTCGCGTTT 3983 Query 124610 GGCATCCAGGTTTCCGAGCTCGATT 124634 |||| ||||||||| ||||||||| Sbjct 3982 AGCATTCAGGTTTCCCAGCTCGATT 3958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546827627124400