Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7809 132 3e-26 seq4071 93.3 3e-14 seq15210 87.8 1e-12 >seq7809 Length=21078 Score = 132 bits (146), Expect = 3e-26 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || ||||| || | |||||| || |||||||||||| || || || ||||| || || Sbjct 13369 AGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGG 13310 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || ||||| || | ||||||||||||||||| | |||||| Sbjct 13309 CCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCT 13250 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| ||| ||| | ||| || | ||| | ||| | | | || ||||||| | Sbjct 13249 TTGTCCTGGAT-TTTAGCTTTGACATTCTCAATCGAGTCGCTAGGT-TCAACTTCCAAAG 13192 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||||||| || || || || |||||||| ||||||||| Sbjct 13191 TAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 13151 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || ||||| || | |||||| || |||||||||||| || || || ||||| || || Sbjct 13597 AGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGG 13538 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || ||||| || | ||||||||||||||||| | |||||| Sbjct 13537 CCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCT 13478 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || || | ||| | ||| | ||| || |||| || Sbjct 13477 TTGTCCTGGAT-TTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGT 13419 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || ||||| || || |||||||||||| Sbjct 13418 AATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13379 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || ||||| || | |||||| || |||||||||||| || || || ||||| || || Sbjct 13825 AGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGG 13766 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || ||||| || | ||||||||||||||||| | |||||| Sbjct 13765 CCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCT 13706 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || || | ||| | ||| | ||| || |||| || Sbjct 13705 TTGTCCTGGAT-TTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGT 13647 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || ||||| || || |||||||||||| Sbjct 13646 AATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13607 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| || | ||| | ||| || || ||| || |||||||| ||||| || Sbjct 14062 CCGCCACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAG 14003 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || |||||||||||||| || |||| | ||||| || || || Sbjct 14002 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGG 13943 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| ||| ||| | || || | ||| | ||| | ||| || Sbjct 13942 ATTCCTTCCTTGTCCTGGAT-TTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13884 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || ||||| || || ||||| || || |||||||||||| Sbjct 13883 CTCTAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13835 >seq4071 Length=35431 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || ||||| |||| ||| || || ||||||||||||||| || || ||||| || || Sbjct 35275 AGTCGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGA 35334 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || |||||||||||||| || || | | |||||||| || || | ||||| Sbjct 35335 CCATCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATGCCCTCT 35394 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 35395 TTGTCTTGGATCTT 35408 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||| ||||| ||| || || ||| || ||||| || || || ||| Sbjct 35038 CCGCCACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAA 35097 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || ||||| || || || || || | | ||||||||| || || Sbjct 35098 AGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGG 35157 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| |||||| | || || | ||| | ||| | || || Sbjct 35158 ATGCCCTCTTTGTCCTGGATCTTA-GCCTTGACATTCTCAATCGAGTCACTGGGTTCGAC 35216 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || |||||||| | || || |||||||||||||| Sbjct 35217 CTCCAACGTAATAGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 >seq15210 Length=8810 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| | | |||| || |||||| |||||||||||| |||||||| || Sbjct 1555 CCGCCGCGAAGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGAC 1496 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || || ||||| | ||||||||||| || || Sbjct 1495 AGAGTACGTCCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGG 1436 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| || ||| ||||| Sbjct 1435 ATACCCTCTTTATCTTGAATCTT 1413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314511812821274