Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7809 170 2e-37 seq4071 145 7e-30 seq15210 122 8e-23 seq13246 89.7 4e-13 >seq7809 Length=21078 Score = 170 bits (188), Expect = 2e-37 Identities = 178/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| || || |||| ||||| | |||||| | ||||| ||||| Sbjct 13148 CGTCATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACC 13207 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||||||||||| |||||| ||||| || |||||||| || || || || || Sbjct 13208 TAGCGACTCGATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGA 13267 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 |||||||| | || | || ||||||||| | ||||| | ||| ||||||| || Sbjct 13268 CCAACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTA 13327 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||||||||||||| | ||| | || ||||| | || |||||||| Sbjct 13328 CAATATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTCCGTGGTGGCAT 13381 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| ||||| | |||||||| || || || || Sbjct 13379 CATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAG 13438 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||||||||| || || ||||| || |||||||| || || || || || || Sbjct 13439 CGACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13498 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||||||| | ||||| | ||| ||||||| ||||| Sbjct 13499 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 13558 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||||||| | ||| | || ||||| | || |||||||| Sbjct 13559 TATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTCCGTGGTGGCAT 13609 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| ||||| | |||||||| || || || || Sbjct 13607 CATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAG 13666 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||||||||| || || ||||| || |||||||| || || || || || || Sbjct 13667 CGACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13726 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||||||| | ||||| | ||| ||||||| ||||| Sbjct 13727 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAA 13786 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||||||| | ||| | || ||||| | || |||||||| Sbjct 13787 TATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTCCGTGGTGGCAT 13837 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| ||||| | |||||||| || || || || Sbjct 13835 CATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTAGAGGTTGAGCCCAG 13894 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||||||||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 13895 CGACTCGATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCA 13954 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | |||| | |||||| |||||| | || || | || | || |||||||| Sbjct 13955 ACAAAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 14014 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| || ||||| || Sbjct 14015 CATTCAGAAAGAGTCTAC 14032 >seq4071 Length=35431 Score = 145 bits (160), Expect = 7e-30 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||| ||| ||||||| | || || ||||| Sbjct 35264 ATGCAGATTTTTGTCAAGACACTGACCGGTAAGACTATTACGTTGGAGGTCGAACCCAGT 35205 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| ||||| || || || |||||||| ||||| ||||| || ||| Sbjct 35204 GACTCGATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAA 35145 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| ||| | || || | ||| ||||||| ||||| Sbjct 35144 CAGAGACTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAT 35085 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 ||||| || ||||||||| | ||| |||| ||||| | || || || |||| Sbjct 35084 ATTCAGAAAGAGTCGACCCTGCATCTGGTGCTGCGTCTTCGTGGCGG-ATAA 35034 Score = 116 bits (128), Expect = 3e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 |||| || |||| || || || || ||||||||||| ||||| ||||| || |||| Sbjct 35431 ACTCAATCGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAAC 35372 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | | | || | |||||| |||||| | || || || ||| ||||||| ||||||| Sbjct 35371 AAAGACTGATCTTCGCCGGTAAACAACTCGAGGATGGTCGCACCCTTTCCGACTACAACA 35312 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| | ||| |||| ||||| | || ||||| || Sbjct 35311 TTCAAAAGGAGTCGACCCTGCATCTGGTCTTGCGACTCCGTGGTGGTAT 35263 >seq15210 Length=8810 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || || || || ||| |||| || || || || || || || Sbjct 1328 CATGCAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTC 1387 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| || |||| || || || |||||||| ||||| || || || || || || Sbjct 1388 GGACTCCATCGAGAATGTAAAGGCCAAGATTCAAGATAAAGAGGGTATCCCTCCAGACCA 1447 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||| |||||||| | ||||| | || | || ||||| || Sbjct 1448 ACAGCGGCTTATATTCGCTGGCAAACAGCTCGAAGATGGACGTACTCTGTCGGATTATAA 1507 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||||||||| || |||| |||| Sbjct 1508 TATTCAAAAGGAGTCCACTCTACACCTGGT 1537 >seq13246 Length=10935 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| |||||||||| || || || || Sbjct 131 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 72 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || |||| || || || || ||||||||||| ||||| ||||| || ||| Sbjct 71 GACTCAATCGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAA 12 Query 27108 CA 27109 || Sbjct 11 CA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434609727538560