Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq15210 183 7e-41 seq7809 125 2e-23 seq4071 125 2e-23 >seq15210 Length=8810 Score = 183 bits (202), Expect = 7e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| ||||| ||||| ||||||||||| ||||| || |||||||||| || || Sbjct 1549 CGAAGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGACAGAGTA 1490 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||| ||||| ||||| ||||| ||||| || |||||||| ||||| | || Sbjct 1489 CGTCCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCC 1430 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| || || || ||||||| ||| || ||||||||||| Sbjct 1429 TCTTTATCTTGAATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGG 1370 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || ||||| ||||| ||||| | |||||| Sbjct 1369 GTTATAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGCAT 1329 >seq7809 Length=21078 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||| || || || || || |||||||| || ||||| ||||| | || || Sbjct 14057 ACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGT 13998 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || || || |||||||| || | |||||| || || || | ||| Sbjct 13997 GCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCC 13938 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||| || ||||| || || || | ||| | |||||||| || Sbjct 13937 TTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAG 13878 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || || | ||||| || || | |||||| Sbjct 13877 AGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Score = 120 bits (132), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||| || || || ||||| ||||| || || || || | |||||| | |||||||| Sbjct 13361 GACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTC 13302 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||||| || || || || || |||||||| || || | ||| || |||||||| Sbjct 13301 GAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTG 13242 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGT 211081 ||| || ||| || || || || | ||| ||| |||||| || | ||| ||||| Sbjct 13241 GATTTTAGCTTTGACATTCTCAATCGAGTC---GCTAGGTTCAACTTCCAAAGTAATCGT 13185 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 13184 TTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||| || || || ||||| ||||| || || || || | |||||| | |||||||| Sbjct 13589 GACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTC 13530 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||||| || || || || || |||||||| || || | ||| || |||||||| Sbjct 13529 GAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTG 13470 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || ||||| || || || | ||| | |||||||| ||||| || || || Sbjct 13469 GATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTT 13410 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| || || | |||||| Sbjct 13409 GCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||| || || || ||||| ||||| || || || || | |||||| | |||||||| Sbjct 13817 GACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCATCTTC 13758 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||||| || || || || || |||||||| || || | ||| || |||||||| Sbjct 13757 GAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTG 13698 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || ||||| || || || | ||| | |||||||| ||||| || || || Sbjct 13697 GATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTT 13638 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| || || | |||||| Sbjct 13637 GCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 >seq4071 Length=35431 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || || || |||||||| || || || || || | |||||| Sbjct 35043 ACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGGGT 35102 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || |||||||| |||||||| || | |||||||| || || | || Sbjct 35103 GCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGGATGCC 35162 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || |||||||||||||| || || || || || | |||| | ||| ||||| | Sbjct 35163 CTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACCTCCAA 35222 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || ||||| ||||| | |||||| Sbjct 35223 CGTAATAGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158308753867970