Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7809 111 1e-19 >seq7809 Length=21078 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || ||||| || ||||| ||| Sbjct 13836 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTAGAGGTTGAGCCCAGC 13895 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| | || | ||||| ||||| ||||| | || |||||||| Sbjct 13896 GACTCGATTGAGAATGTGAAGGC-CAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCA 13954 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||| || ||||| |||||||| || || | ||||| | |||||||| Sbjct 13955 ACAAAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 14014 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| ||| | ||| |||| Sbjct 14015 CATTCAGAAAGAGTCTACACTGCATCTAGT 14044 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || ||||| || ||||| ||| Sbjct 13380 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13439 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| | || | ||||| |||||||| || | ||||| || || Sbjct 13440 GACTCGATTGAGAATGTGAAGGC-TAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13498 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||||||||| ||||| | ||||| | ||| ||||| Sbjct 13499 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 13558 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 13559 TATTCAAAAGGAGTCGAC 13576 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || |||||||| ||| | |||||||| | | Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| | ||| | |||| | |||||||| || | ||||| || || Sbjct 13212 GACTCGATTGAGAATGTCAAAGCTAAAA-TCCAGGACAAAGAGGGAATCCCGCCGGACCA 13270 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||||||||| ||||| | ||||| | ||| ||||| Sbjct 13271 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 13330 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 13331 TATTCAAAAGGAGTCGAC 13348 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || ||||| || ||||| ||| Sbjct 13608 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13667 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| | || | ||||| |||||||| || | ||||| || || Sbjct 13668 GACTCGATTGAGAATGTGAAGGC-TAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13726 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||||||||| ||||| | || || | ||| ||||| Sbjct 13727 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAA 13786 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 13787 TATTCAAAAGGAGTCGAC 13804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337775703483224