Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4071 113 1e-19 seq7809 104 6e-17 >seq4071 Length=35431 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || || || || || || ||||| || | |||||| |||| | || Sbjct 35043 ACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGGGT 35102 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| ||||||||||| |||| |||||||| || || || || Sbjct 35103 GCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGGATGCC 35162 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| |||||||| ||| ||| || || | ||| || ||| || || || Sbjct 35163 CTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACCTCCAA 35222 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||| || ||||| || |||| Sbjct 35223 CGTAATAGTCTTACCGGTCA 35242 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || ||| || || || || || || ||||| | ||||| |||| | || Sbjct 35271 ACGGAGTCGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGGGT 35330 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || || || || |||||||| |||| ||||||||| || || || || Sbjct 35331 GCGACCATCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATGCC 35390 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGAT 225647 || |||||||||||||| ||||||| ||||| Sbjct 35391 CTCTTTGTCTTGGATCTTGGCCTTCACATTCTCGAT 35426 >seq7809 Length=21078 Score = 104 bits (114), Expect = 6e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || || || ||||| || | |||||||| | | || Sbjct 14057 ACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGT 13998 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || || || || |||||||| |||| |||||| || || || || || Sbjct 13997 GCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCC 13938 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| ||||| || ||||||| || || | ||| || || || |||| Sbjct 13937 TTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAG 13878 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||| ||||| || || | ||| | ||||| Sbjct 13877 AGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191663671563932