Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5746 179 5e-40 seq2636 172 8e-38 seq28812 102 1e-16 >seq5746 Length=27722 Score = 179 bits (198), Expect = 5e-40 Identities = 373/550 (68%), Gaps = 8/550 (1%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAAT---CCAGGGCATTCATTTGGGCACATCAA 77980 ||||||||| || |||||| || ||| ||| || || || || | || ||||| Sbjct 14241 TTCAAATTCTTCGCCCCAA-CA--ATCGAATAGACCTGGACACTCGTGAGGATCCATCAG 14297 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 || ||| | | | | || | || ||| ||| || | ||||| ||||| ||||| Sbjct 14298 TGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCAGGAATCCAGAGAGCCTG 14357 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 || ||||| || | ||| ||| ||| || || ||||| || || | ||||| Sbjct 14358 GAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTACGGAGCTCCACAAACTG 14417 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 || || || | ||||||||||| || || ||||| | | || || || || || || Sbjct 14418 CAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCACCGGGCCGCTTGTTTCC 14477 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 |||||||| | || | ||| ||||| |||||||| | || |||||||| | ||| || Sbjct 14478 ACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGCATTGGAACCAAACCATT 14537 Query 78221 AGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC-GCGAATATTACTAATGGATA 78279 ||| |||||| ||||| | ||| || | || ||||| || || || | || Sbjct 14538 GGATTCTCCATTCGTTCCCGCTATAAAAGTACC-CTTGCTTCGTATGCAGTGAACGTTTA 14596 Query 78280 TCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATAC 78339 || || || || || | || ||||| || || || | ||||| || || || || | Sbjct 14597 GACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTTCAAAGTGTCATAAATGC 14656 Query 78340 CCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 |||| || ||||||||| |||| | || || |||| || ||||||||| | || | Sbjct 14657 CCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGACATTTGAGGCAGAGGGG 14716 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT 78459 | || || ||||||| || || |||||||| |||||||| ||| | || | || | || Sbjct 14717 TCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTTTCCGGACATGAGTTCGT 14776 Query 78460 ATGTTTCAAT 78469 | || | ||| Sbjct 14777 AAGTCTAAAT 14786 >seq2636 Length=44840 Score = 172 bits (190), Expect = 8e-38 Identities = 410/622 (66%), Gaps = 42/622 (7%) Strand=Plus/Plus Query 48126 TGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCG 48185 ||||| |||| | ||| ||||| ||| ||||| |||||||| | || |||| ||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 48186 TTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA 48245 || ||||| | || ||||| || ||||| || || | ||| || || | ||| || Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 48246 GATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG 48305 || || |||||||| | || |||||||| ||||| || || | |||| || || Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG 42708 Query 48306 G-CTTCGTTGTGTATCCA--CCGTT---GTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | ||||| || ||| || || |||||||||||||||||||||| |||||||| Sbjct 42709 GACTTCGA---GTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGT 42765 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGttttt---------------------------- 48391 | |||| || ||||| || || |||| | Sbjct 42766 AGGGTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTA 42825 Query 48392 ---ttC-ATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 ||| |||| || |||| || ||||| || | ||| ||||||||| ||||||| Sbjct 42826 CCGTTCGATTGGG-TCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAA 42884 Query 48448 TATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCG 48507 ||||||| ||||| ||||| || || || || || | ||||| | |||||||| || Sbjct 42885 TATTTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTT 42944 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 || || ||||| | | ||| ||||| |||||||| || || || ||||||||||| | Sbjct 42945 GACTGAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGA 43004 Query 48568 ATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTT 48627 |||| | ||| || | || ||| | | || | ||||||| | || | Sbjct 43005 GGACATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCT 43064 Query 48628 TTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCC 48687 | | | || ||||| ||| | ||||||||||| ||| | || || || || | | || Sbjct 43065 TCGCCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCC 43124 Query 48688 ATATATCACTGTATTGGATTGG 48709 | || ||| || ||||| || Sbjct 43125 AGATGTCATGATACTGGATGGG 43146 >seq28812 Length=1987 Score = 102 bits (112), Expect = 1e-16 Identities = 109/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 |||||| || |||||||||||||| ||||| ||||| || || || || || | ||||| Sbjct 957 ATACATCTCCGAGTGAATATTTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTC 1016 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | |||||||| || ||| || ||||| | | ||| ||||| |||||||| ||| | Sbjct 1017 GGA-ATCTGTACTTCTTTACTGAAGCGTTCCACAAGATTTTCATTGACTATTCCGTCATT 1075 Query 48551 AGCAGCAAAAAATGCTAATACAT 48573 || ||||||||||| | |||| Sbjct 1076 TGCGGCAAAAAATGCGAGGACAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694175776185920