Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5746 196 7e-45 seq2636 176 6e-39 seq28812 98.7 1e-15 >seq5746 Length=27722 Score = 196 bits (216), Expect = 7e-45 Identities = 385/567 (68%), Gaps = 2/567 (0%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 || |||| ||| || ||| ||||||||| || |||||| ||| | ||| ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 || | ||| ||||| || ||||| | | | || | || ||| ||| || | ||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 || ||||| ||||| || ||||| || | ||| ||| ||| || || ||||| Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 || || | |||| || || || | ||||||||||| || || || || | || Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 || || || || || || |||||||| | || | ||| ||||| |||||||| | || | Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520 Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC-ACG 76857 ||||||| | || || ||| ||||| ||||| | ||| || | || | ||| || Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACC-CTTGCTTCG 14579 Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917 || || ||| || || || || || |||| || || || ||||| | || Sbjct 14580 TATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTT 14639 Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977 ||| |||||||| |||||||| || || |||||| |||| | || || |||| || || Sbjct 14640 CAAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGA 14699 Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037 ||||||| | || || || || ||||| | || || ||||||||||| ||||| || Sbjct 14700 CATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTT 14759 Query 77038 TTCAGAAAGTAGATTGTATGTTTCAAT 77064 | | || | || | ||| || | ||| Sbjct 14760 TCCGGACATGAGTTCGTAAGTCTAAAT 14786 >seq2636 Length=44840 Score = 176 bits (194), Expect = 6e-39 Identities = 409/619 (66%), Gaps = 36/619 (6%) Strand=Plus/Plus Query 46615 TGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCG 46674 ||||| |||| | ||| ||||| ||| ||||| |||||||| | || |||| ||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 46675 TTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAA 46734 || ||||| | || ||||| || |||||||| || | ||| || |||| ||| || Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 46735 GATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG 46794 || || |||||||| | || ||||| || || || || || || | |||| || || Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG 42708 Query 46795 G-CATCA--TTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATT 46851 | | || | | |||||| | | |||||||||||||| ||||| |||||||| | Sbjct 42709 GACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGG 42768 Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATC------------------ACTA--- 46890 |||| || ||||| || || |||| | | | | || Sbjct 42769 GTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCG 42828 Query 46891 ----------TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 || |||| ||| ||||| || | ||| ||||||||| || ||||| || Sbjct 42829 TTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATT 42888 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACA 47000 ||| || || ||||| || || || || || | ||||| | ||||||||| ||| || Sbjct 42889 TTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACT 42948 Query 47001 AAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATA 47059 || ||||| |||| ||| ||||| |||||||| || || || ||||||||||| | | Sbjct 42949 GAAGCGTTCT-ACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGA 43007 Query 47060 CATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTG 47119 ||| | ||| || | || || || | || | ||||||| | || || | Sbjct 43008 CATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCG 43067 Query 47120 ATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATA 47179 | || ||||| ||| | ||||| ||||| ||| | || || || || | | ||| | Sbjct 43068 CCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGA 43127 Query 47180 TATCACGATATTGGATCGG 47198 | ||| |||| ||||| || Sbjct 43128 TGTCATGATACTGGATGGG 43146 >seq28812 Length=1987 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/173 (74%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 || |||| ||| | || || | ||| |||||| || || ||||| ||||| || || Sbjct 928 TCATTAATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCA 987 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 ||||| || || || || || | ||||| | ||||||||| ||| ||| || ||||| Sbjct 988 ATCTGGAAGCCATAGAAGCAACGGGCTTCGG-AATCTGTACTTCTTTACTGAAGCGTTCC 1046 Query 47011 GACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACAT 47062 |||| ||| ||||| |||||||| ||| | || ||||||||||| | |||| Sbjct 1047 -ACAAGATTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712428412632960