Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2636 116 4e-21 >seq2636 Length=44840 Score = 116 bits (128), Expect = 4e-21 Identities = 313/481 (65%), Gaps = 31/481 (6%) Strand=Plus/Plus Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 || ||||| | ||| ||||| ||| || || |||||||| | || || | |||||| Sbjct 42532 TTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTG 42591 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 ||||| ||||| ||||| | || || || || | ||| || || | ||||| || Sbjct 42592 CTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGAC 42651 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 ||||||||||||| ||||| || || |||||||| || ||||| ||| || | Sbjct 42652 CCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTGGAC 42711 Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 || | ||| ||||||||| || ||||| ||||||| || ||||| | ||| Sbjct 42712 TTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTT 42771 Query 23737 TCAATTGCTTT-------------------------TAAGAG-AAAAGTTTTTTC--TTC 23768 | | || || |||||| | || || | ||| Sbjct 42772 TGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCGTTC 42831 Query 23769 -ATT--ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTC 23825 ||| || | ||||| ||||| || || | | ||||||||| || ||||||||||| Sbjct 42832 GATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTC 42891 Query 23826 AATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAA 23885 || |||||||| || ||||| || || | ||||| | | || || || | | || Sbjct 42892 GATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACTGAA 42951 Query 23886 TCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATA 23945 | || | | |||||| ||||| || || || || || ||||| || || || ||||| Sbjct 42952 GCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATA 43011 Query 23946 T 23946 | Sbjct 43012 T 43012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521117886929200