Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15210 154 4e-32 seq7809 136 1e-26 seq4071 123 6e-23 >seq15210 Length=8810 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || |||||||| || || || ||||||||||| || || ||| Sbjct 1332 CAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCGGAC 1391 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||| || || |||||||| || ||||| || |||||||| ||||| || Sbjct 1392 TCCATCGAGAATGTAAAGGCCAAGATTCAAGATAAAGAGGGTATCCCTCCAGACCAACAG 1451 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || |||||||||||||||||| | ||||| | |||||||| | Sbjct 1452 CGGCTTATATTCGCTGGCAAACAGCTCGAAGATGGACGTACTCTGTCGGATTATAATATT 1511 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || || || || | ||||| Sbjct 1512 CAAAAGGAGTCCACTCTACACCTGGTCCTCAGACT 1546 >seq7809 Length=21078 Score = 136 bits (150), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || |||||||| || || | ||||| ||||| || || || ||||| || || ||| Sbjct 13383 CAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGA--GCCCAGCG 13440 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || || || ||||||||||| |||||||| |||||||| | Sbjct 13441 ACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAAC 13500 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| || || || || ||||| ||||||||||| | || ||| |||| || || Sbjct 13501 AGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAATA 13560 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | ||||| || || || || |||||||| ||| | ||| Sbjct 13561 TTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTC 13598 Score = 136 bits (150), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || |||||||| || || | ||||| ||||| || || || ||||| || || ||| Sbjct 13611 CAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGA--GCCCAGCG 13668 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || || || ||||||||||| |||||||| |||||||| | Sbjct 13669 ACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAAC 13728 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| || || || || ||||| ||||||||||| | || ||| |||| || || Sbjct 13729 AGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAATA 13788 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | ||||| || || || || |||||||| ||| | ||| Sbjct 13789 TTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTC 13826 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || |||||||| || || | ||||| ||||| || || || ||||| || || ||| Sbjct 13839 CAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTAGAGGTTGA--GCCCAGCG 13896 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || || || |||||||| ||||||||||| || || || | Sbjct 13897 ACTCGATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCAAC 13956 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || |||| ||||||||||| ||||| ||||| ||||| | || || | ||||| ||| Sbjct 13957 AAAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAACA 14016 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||||| || ||||||||||| || Sbjct 14017 TTCAGAAAGAGTCTACACTGCATCTAGT 14044 Score = 131 bits (144), Expect = 4e-25 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || ||||| || | || || |||||||| || | || || ||| ||| Sbjct 13155 CAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC--- 13211 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||| | || ||||| |||||| || || ||||||||||| |||||||| |||||||| Sbjct 13212 GACTCGATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13271 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||||| || || || || ||||| ||||||||||| | || ||| |||| || || Sbjct 13272 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13331 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | ||||| || || || || |||||||| ||| | ||| Sbjct 13332 ATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTC 13370 >seq4071 Length=35431 Score = 123 bits (136), Expect = 6e-23 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 |||||||| || || ||||| || |||||||| || ||||| || ||||| ||| || Sbjct 35426 ATCGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAACAAAGA 35367 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || ||||||||||| ||||| ||||| ||||| | || ||| |||| || ||| | ||| Sbjct 35366 CTGATCTTCGCCGGTAAACAACTCGAGGATGGTCGCACCCTTTCCGACTACAACATTCAA 35307 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || |||||||| || ||| ||||| Sbjct 35306 AAGGAGTCGACCCTGCATCTGGTCTTGCGACTC 35274 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || || || | ||||| ||| | ||| Sbjct 35261 CAGATTTTTGTCAAGACACTGACCGGTAAGACTATTACGTTGGAGGTCGAACCCAGTGAC 35202 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| ||||| ||||| ||||||||||| || ||||| || ||||| || Sbjct 35201 TCGATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAACAG 35142 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| || || || ||||| ||||| | || ||| |||| || || | Sbjct 35141 AGACTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAATATT 35082 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || |||||||| || Sbjct 35081 CAGAAAGAGTCGACCCTGCATCTGGT 35056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202855523920932