Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4071 149 6e-31 seq7809 147 2e-30 seq15210 91.5 1e-13 >seq4071 Length=35431 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||||||||| || ||| |||||||| || |||||||| Sbjct 35038 CCGCCACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAA 35097 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| |||||||| ||||| ||||| | ||||||||| | || Sbjct 35098 AGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGG 35157 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||| |||||| ||| || ||| | | | | ||| || | || ||| Sbjct 35158 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACC 35217 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 35218 TCCAACGTAATAGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || || ||||||||||| || |||||| |||||||| |||||||| Sbjct 35266 CCACCACGGAGTCGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 35325 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| || || |||||||| ||||| | |||||||| | || Sbjct 35326 AGGGTGCGACCATCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 35385 Query 41756 ACGCTCTCCTTGTC 41769 | || ||| ||||| Sbjct 35386 ATGCCCTCTTTGTC 35399 >seq7809 Length=21078 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || || || ||||| || || |||||| ||||| || |||||||| Sbjct 13607 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13548 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || ||||| || ||||| || || ||||| ||||||||||||| || Sbjct 13547 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13488 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| |||||| ||||| | | | |||||| | ||| || Sbjct 13487 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13428 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || ||||| || |||| |||||| ||||||||||||||| Sbjct 13427 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13379 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || || || ||||| || || |||||| ||||| || |||||||| Sbjct 13835 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13776 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || ||||| || ||||| || || ||||| ||||||||||||| || Sbjct 13775 AAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13716 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| |||||| ||||| | | | |||||| | ||| || Sbjct 13715 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13656 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || ||||| || |||| |||||| ||||||||||||||| Sbjct 13655 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13607 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || |||| ||| |||||||| || ||| ||||||||||| || || ||| Sbjct 14062 CCGCCACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAG 14003 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||| || || |||||||| || || | ||||| || | ||| Sbjct 14002 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGG 13943 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| |||||| ||||| | | | |||||| | ||| ||| Sbjct 13942 ATTCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACC 13883 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || ||||| || |||| |||||| ||||||||||||||| Sbjct 13882 TCTAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13835 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || || || ||||| || || |||||| ||||| || |||||||| Sbjct 13379 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13320 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || ||||| || ||||| || || ||||| ||||||||||||| || Sbjct 13319 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13260 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCA 41813 | | ||| |||||| || |||| |||| || | | | |||||| | || | Sbjct 13259 GATTCCCTCTTTGTCC-TGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAA 13201 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || |||||||| || |||| ||||| || || ||||||||| Sbjct 13200 CTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 13151 >seq15210 Length=8810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || | | ||||| || || ||| |||||| ||||| ||||| || || Sbjct 1555 CCGCCGCGAAGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGAC 1496 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||| ||||| |||||||| || ||||||||||| | || Sbjct 1495 AGAGTACGTCCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGG 1436 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| || | | ||| | || | ||| | | | | ||| | ||| || Sbjct 1435 ATACCCTCTTTAT-CTTGAATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAAC 1377 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | ||||| || || || || || ||||| || || ||||||||| Sbjct 1376 CTCGAGGGTTATAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGCATG 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461975891293600