Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4373 212 6e-50 >seq4373 Length=18302 Score = 212 bits (234), Expect = 6e-50 Identities = 524/777 (67%), Gaps = 26/777 (3%) Strand=Plus/Minus Query 16775 TACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCG 16834 || || ||||| | | || || || || | |||||| || || || ||||| | || | Sbjct 10793 TAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTG 10734 Query 16835 CAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACA 16894 || |||||||| || | | || || |||||||| | ||||| || ||||| | | Sbjct 10733 CAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA 10674 Query 16895 ACCGCTTC-CTTAATAAT-ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952 || || || |||| || | ||| |||| ||||| | || || | | ||| ||||| Sbjct 10673 ACTGCCTCTCTTATTATTGACT--CAACACGTTCTTTCGAAGGCTTTTTGATAATATGTT 10616 Query 16953 TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAG 17012 |||| | ||||| |||||||| ||||| | ||| |||||||| ||||| | ||| || Sbjct 10615 TAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTACTGATTAATTCATTGC 10556 Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072 ||| | || || ||||| ||||||||||| | ||| ||||| || ||||| | Sbjct 10555 TAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTAC 10496 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT 17132 ||||||| || | ||| || || | |||||| || ||||| ||||| || | || | Sbjct 10495 CAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAG--- 10439 Query 17133 CTTTG---TTACGAATCCATTTCTGCACCCACTCGGC--TTTTTGCTTTATGCAATCCAT 17187 |||| | | |||||| | |||||| || ||||||| | ||| | Sbjct 10438 ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC--AACACAAGTTA- 10382 Query 17188 CGTTTC-TATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATC 17244 ||| | |||||| || | | || || |||| | || | ||| | || || ||||| Sbjct 10381 AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCT-TTGGA-GTCTTTGATGTATGTATC 10324 Query 17245 GATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304 || | || ||||||||| ||||| || ||||| || |||||||| | ||| ||||| Sbjct 10323 AATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCATTCCATAAAA 10264 Query 17305 GCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCAC 17364 ||| || | || | || || |||||| | ||| ||||| || || ||| || Sbjct 10263 GCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTTCTCGAGTAC 10204 Query 17365 GATGCCGTCGCTCGCGGCGAAAAACGCCAATA--TATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| ||||| || || || || || | || | | ||||||| ||| | Sbjct 10203 AATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGAT--ATGAAATGACGTTCCCCA 10146 Query 17423 GGTGTAAG-AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 | || || | ||| | | | ||||||||| | |||||| ||||| ||||| Sbjct 10145 ACCTTGAGCGACTC-CCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCA 10087 Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||| ||| || ||||| ||||| | || ||| | ||| | |||| ||||||||| Sbjct 10086 AAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGGAA 10030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517156535095200