Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4373 259 5e-64 >seq4373 Length=18302 Score = 259 bits (286), Expect = 5e-64 Identities = 512/753 (68%), Gaps = 6/753 (1%) Strand=Plus/Minus Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT 16093 || ||||| | |||||| || || |||||||| | | |||||| ||||| || | | Sbjct 10772 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 10713 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 || || ||||||| || |||||| | |||||||| | ||| || ||| | || || Sbjct 10712 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACTGCCTCTCTTATTATTGAC 10653 Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | ||| || || || | | | | | |||||||| | |||||| ||||| || Sbjct 10652 TCAACACGTTCTTTCGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCA 10593 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 ||||| |||||||||||||| ||||| | ||| ||| ||||| | || ||||| Sbjct 10592 CAATGAAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 10533 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 ||||||||||| | ||||||||| || || || || ||||| || | ||| || || Sbjct 10532 CCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACT 10473 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||||||| ||||| ||||| || | |||| | || | |||||| | | Sbjct 10472 GCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAAT 10413 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC-TATGGCCTT--AAACAATTTC 16450 |||| | || |||| | | |||| | ||| | |||||| || | | || || Sbjct 10412 GCCCACTGAGCCTTTTTTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTC 10354 Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510 |||| | || || | || || |||||||| | |||| ||||||||| ||||| Sbjct 10353 CCTTTCTTTGGA--GTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGA 10296 Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 || ||||| || |||||||| | |||||| ||||| ||| |||| | || || |||||| Sbjct 10295 ATATTCTCAATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCC 10236 Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630 | || ||||| |||||||| || || |||||||| || ||||| || || Sbjct 10235 TGGCTGAAGCGTTCTAAGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCT 10176 Query 16631 AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690 || | || ||||||| ||| || | || | ||||| | | | |||| Sbjct 10175 AACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCT 10116 Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTC 16750 ||||| | |||||| ||||| |||||||| ||| || ||||| ||||| | | | Sbjct 10115 TTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGC 10056 Query 16751 CAAATATCATTGTATTGTATGGGAAATACGACG 16783 || | ||| | |||| |||||| || | |||| Sbjct 10055 CAGACATCGTGATATTCTATGGGGAAAAGGACG 10023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511029944224800