Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4373 237 2e-57 seq5303 109 7e-19 >seq4373 Length=18302 Score = 237 bits (262), Expect = 2e-57 Identities = 509/751 (68%), Gaps = 15/751 (2%) Strand=Plus/Minus Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026 || ||||||| ||| || || || ||||| || ||||||||||| || | | Sbjct 10772 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 10713 Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 24085 ||||| ||||| | | | ||| || ||||| || ||| || || ||| |||| || || Sbjct 10712 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA-ACTGCCTCTCTTATTATTGA 10654 Query 24086 TCTTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAA 24142 || ||||| ||| || | |||| ||||||||| | | ||| ||||| Sbjct 10653 CTCAACACGTTCTT---TCGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAA 10597 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 ||| || || || || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 10596 ATCACAATGAAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 10537 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 || || || || |||||||| ||||| | || || |||||||| |||| ||||| Sbjct 10536 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTC 10477 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTT 24319 ||||| ||||| ||||| | | |||| || || | || || | ||||| | Sbjct 10476 CACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATC 10417 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGA 24377 | ||||| | ||||| ||| ||||||| | ||| || ||| || || |||||| Sbjct 10416 TAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGA 10359 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 ||| |||| || ||||| | ||||||||||| || | | |||||||| || Sbjct 10358 AAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAG 10299 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 ||||| || ||||| || || || | ||| || || || | | |||| | ||||| ||| Sbjct 10298 TGAATATTCTCAATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGGACT 10239 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 || | || |||||| | || || || ||||||||||| || ||||| || Sbjct 10238 TCCTGGCTGAAGCGTTCTAAGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAA 10179 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 || || || | ||| |||| ||| | | || | ||||| ||| | Sbjct 10178 GCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGA 10119 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 ||||| || | |||||| |||||||| |||||||| || || | ||||| ||||| | | Sbjct 10118 TCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAA 10059 Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAA 24708 | ||||| || ||||||| || || |||| Sbjct 10058 TGCCAGACATCGTGATATTCTATGGGGAAAA 10028 >seq5303 Length=16207 Score = 109 bits (120), Expect = 7e-19 Identities = 185/265 (70%), Gaps = 10/265 (4%) Strand=Plus/Plus Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATT 54294 || |||||| ||| | ||||| || || | || ||| | ||| ||| || || || Sbjct 6846 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTG---CGGATGTT 6902 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | || || || || ||||| || ||||||| || | ||| ||| ||| ||||| Sbjct 6903 ATGAACATTTATTCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGT 6962 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TT 54412 || || ||||| ||||||||||| || |||| | | |||||||| || || | | Sbjct 6963 GTCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTG 7022 Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 |||| | |||||| || ||||| | || || ||||| || ||||||||||||||| Sbjct 7023 TGGTTTGG--GAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCA 7080 Query 54473 GAAAGTAGATTGTACGTCTCGATAG 54497 || | || || ||||||| || || Sbjct 7081 GACATCAGGTTATACGTCTAGAAAG 7105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593275269787200