Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2618 131 3e-25 seq2601 96.9 5e-15 seq11542 87.8 3e-12 seq9656 87.8 3e-12 >seq2618 Length=24172 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||||| || || ||||||||||| |||| |||| | | Sbjct 20719 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 20778 Query 124599 GATACAATTTCTA-ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| | |||| | ||||||||||||||||||||| || ||||| || || Sbjct 20779 GATACAATAGAAGCAGTTAAGGC-GAAAATTCAAGATAAAGAAGGCATCCCACCAGACCA 20837 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || |||||||| || |||||| | || ||| | ||||| | || ||||| Sbjct 20838 ACAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAA 20897 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || |||||||| | ||| | || | ||| | || |||||||| Sbjct 20898 TATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGGTAT 20948 >seq2601 Length=24241 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| ||||||| | ||||| || || || || | ||| |||| | | Sbjct 23948 AATGCAAATATTCGTAAAGACGTTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 23889 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || ||| |||||||| ||||||||||| || ||||| || Sbjct 23888 TGATACTATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCA 23829 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || || || || || ||| | || || | || || || Sbjct 23828 ACAACGTTTGATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 23769 Query 124718 TATTCAAAAAGAA 124730 || || |||||| Sbjct 23768 CATCCAGAAAGAA 23756 >seq11542 Length=8690 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 202759 AACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGG 202818 |||| |||||| ||| |||||||| ||| ||||||||| ||||||||||| || || Sbjct 7002 AACAGAAAATTTCCGTAAACATCCTTTATAGTTCATATATCGTATTTTACCAAAAATAGG 7061 Query 202819 TCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATA 202864 || ||| ||| || |||||||| |||||| |||| ||||||| Sbjct 7062 TCGTTCAGGCCAGCCTTGATCATGAACACCACATATTGCCCACATA 7107 >seq9656 Length=10280 Score = 87.8 bits (96), Expect = 3e-12 Identities = 94/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 205392 ATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATG 205451 ||| ||||| |||| ||||| | |||| || ||| ||||||||| ||| | ||| Sbjct 406 ATAAATATGCGCATCGCCAATTGTGTGAACGAACTCACCAGGTTTTAAACCAGTAATATG 347 Query 205452 TGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCAT 205511 ||||||||||| || |||||| |||||| |||| ||| || |||||||| | |||| | Sbjct 346 AGCAATCATATATGTTAATAAAGCATAACTTGCAATATTGAACGGTACACCAAGACCC-T 288 Query 205512 ATC 205514 ||| Sbjct 287 ATC 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754888085952000