Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4373 266 3e-66 >seq4373 Length=18302 Score = 266 bits (294), Expect = 3e-66 Identities = 586/875 (67%), Gaps = 54/875 (6%) Strand=Plus/Minus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||||||||| ||||| ||| ||||| || ||||| |||||||| | || |||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGT-------------------------ATT 16040 |||||| ||||||||||| | ||| ||| ||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 16041 TA-------TCGCATC-CCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACT 16091 || | ||| |||| | |||| | || || || || | |||||| || |||| Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 16092 GTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt 16151 | ||| | | || |||||||| ||||| | || || | ||||||| |||||| | Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 16152 ttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGT 16211 | |||||| ||| || || | ||||| | || | || | ||| || ||| | Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTAT-TGACTCAACACGTTCTTT--CGAAGGCT 10631 Query 16212 TTA--ATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTAC 16268 || |||| |||||||| | || |||||| ||||||||||| | ||||||||| |||| Sbjct 10630 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTAC 10571 Query 16269 TTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328 | ||||| || || ||| | || || ||||| || |||||||| |||| ||| |||| Sbjct 10570 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 10511 Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388 |||| || || ||||||||| || | |||||| ||||| ||||| |||| || || | Sbjct 10510 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 10451 Query 16389 CACCGTACGTTCTAtttttact-ttctatccattttttagcccaatttgctttttgtttA 16447 | | | | | |||| | | | | ||||| | | ||||| | || |||| | | Sbjct 10450 CTGCAAAAG-TAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 10392 Query 16448 ACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATA 16507 ||||| | | ||| ||| || || || | | | | |||||||| ||| || Sbjct 10391 ACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 10332 Query 16508 TAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAA 16567 || ||||| |||| |||| |||||||| || ||||||||||| || |||||||| | Sbjct 10331 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCATT 10272 Query 16568 CCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTT 16627 ||||||||||| | | | || | || || ||||| | || | |||| | ||| Sbjct 10271 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTTC 10212 Query 16628 TCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttt 16687 ||| || ||||| || || || ||||| || || | | || || ||| | Sbjct 10211 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAA----TG 10156 Query 16688 tCGTTATCTGAAAGTTTTAACCAGTCAGAA------AAATCTTTTGATAAATCGACCTCT 16741 ||| || || || | | | || || | |||||| || ||||| |||||| Sbjct 10155 ACGT--TCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCT 10098 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 || ||||||||||||||||| |||||||| ||||| Sbjct 10097 TCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 10063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462164306604000