Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4373 210 2e-49 >seq4373 Length=18302 Score = 210 bits (232), Expect = 2e-49 Identities = 462/686 (67%), Gaps = 50/686 (7%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||||||||| ||||| || ||||| ||||| || || ||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 13975 CATAAAATCAAATGGATTTGT-----TGACA----TAAAC-------------------- 14005 |||||| ||||| ||||| || ||| | ||||| Sbjct 10867 CATAAAGTCAAAAGGATT-GTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAAT 10809 Query 14006 ------ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATAT 14059 || || ||| |||| ||||| | ||||| || || || || || ||||| || Sbjct 10808 TTACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTAC 10749 Query 14060 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 14119 ||| |||| | | |||||||| || |||| | || || | | | |||||| Sbjct 10748 TGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAAC 10689 Query 14120 TCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGG 14178 || | |||||| ||| || ||||| |||| || | || | ||| || ||||| Sbjct 10688 TCCTGTTCTATTAGA-ACTGCCTCTCTTATTATTGACTCAACACGTTCTTTCGAAGGCTT 10630 Query 14179 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 14238 | | | ||||||||| | || ||| || |||||||||||||| || || |||||||| Sbjct 10629 TTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTACT 10570 Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 10569 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 10510 Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358 || ||||| || ||||| || | || || ||||| ||||| || ||||| ||||| Sbjct 10509 AGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 10450 Query 14359 TCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 | |||| | | ||| | || | ||||| | | ||||| | || |||||| || Sbjct 10449 TGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 10391 Query 14418 TAAAA--TCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT--AGTACTTGA 14472 | || | ||| || || || || || | || || |||| ||||| ||| ||| Sbjct 10390 CACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG- 10335 Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||||||||||| | ||| |||||||||||||| || || || ||||||||||| Sbjct 10334 -ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTG 10276 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 | |||||||| || | | | |||| Sbjct 10275 CATTCCATAAAAGCAACGAACCTCTG 10250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481982996695200