Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4373 230 3e-55 seq5303 111 2e-19 >seq4373 Length=18302 Score = 230 bits (254), Expect = 3e-55 Identities = 608/927 (66%), Gaps = 45/927 (5%) Strand=Plus/Minus Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||| |||||||| || || || || ||||| || || |||||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 33353 CATGAAATCAAACGGATTGGTA---------------------AC-ATT----GTAAAtt 33386 ||| || ||||| |||||| | || ||| | ||||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 33387 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATG 33438 | ||| | | || | |||| | | || ||||||| ||||| || || Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 33439 TTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATT 33498 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 33499 CTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGAT 33558 | ||||| || || || | | |||| || | ||| ||||| ||| || | Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTATTGACTCAACACGTTCTT---TCGAAGGCT 10631 Query 33559 GTA--ATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTAC 33615 | |||| ||||||||| | | ||| |||||||| || || || || |||||||||| Sbjct 10630 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTAC 10571 Query 33616 TAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33675 | |||||||| || ||| | ||||| ||||| || || || || |||||||| |||| Sbjct 10570 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 10511 Query 33676 TGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCT 33735 | | ||||| || ||||| || | ||||| ||||| ||||| ||||| | | | Sbjct 10510 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 10451 Query 33736 CTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 33792 || || || | || || | ||||| | | ||||| | ||||| ||| | Sbjct 10450 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 10391 Query 33793 CACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 33851 |||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 10390 CACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 10332 Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || ||||| || || | | |||||||| || ||||| || ||||| || ||||| | | Sbjct 10331 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCATT 10272 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 || || || || | | |||| | ||||| ||||| | || |||||| | || Sbjct 10271 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTTC 10212 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 || || ||||| ||||| || ||||| || || || || | ||| |||| | Sbjct 10211 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGT 10152 Query 34032 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 34091 || | | || | ||||| ||| |||||| || | |||||| |||||||| Sbjct 10151 TCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACA 10092 Query 34092 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGG 34151 |||||||| || || | ||||| ||||| | || ||||| || ||||||| || ||| Sbjct 10091 GTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGG 10032 Query 34152 AAAATAACAAATCTATTTGGATTTGGT 34178 |||| || || | | ||| |||||| Sbjct 10031 AAAAGGACGAAACGGTGTGGGTTTGGT 10005 >seq5303 Length=16207 Score = 111 bits (122), Expect = 2e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || |||||| Sbjct 6916 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTCGTAAATGCCT 6975 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 ||||| ||||| || |||| | | |||||||| || || | || | | |||| Sbjct 6976 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTT 7035 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || || ||||| | || || ||||| || ||||||||||||||||| | || || ||| Sbjct 7036 CCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTATAC 7095 Query 63726 GTCT 63729 |||| Sbjct 7096 GTCT 7099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629344134619200